GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004646-TA|BGIBMGA004646-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like
         (332 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    28   0.099
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   8.6  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 28.3 bits (60), Expect = 0.099
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 3   VTRVAESRTEFKLKSLPEDAISSVKFAPKSNQYLLVSSWDCSVRLYDVTANIERHKYN 60
           V  +A     FK+  +   A+ SVK         L   +  +++LY +T N+E   YN
Sbjct: 52  VVSLAGGLKSFKILPIEPLAVDSVKIGESQGSVTLRQEYK-NIKLYGLTKNLEIKNYN 108


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 117 VLTGSWDGTVKMWDSRVPNCVGTYNQ 142
           + TGS+D     WD+  P      NQ
Sbjct: 124 IKTGSYDYPSPEWDTVTPEAKNLINQ 149


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.133    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,590
Number of Sequences: 429
Number of extensions: 3973
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 2
length of query: 332
length of database: 140,377
effective HSP length: 58
effective length of query: 274
effective length of database: 115,495
effective search space: 31645630
effective search space used: 31645630
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)