GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004644-TA|BGIBMGA004644-PA|IPR002848|Translin
         (280 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.3  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   3.0  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 7/100 (7%)

Query: 65  IESKRIIFLLHSAITEESTAKVIEEAKERFQKLIKGPIKSVGLELENSPAYLHSRAVTAG 124
           IE+  I   LH   T   T+K++   K R +K  KG +K   +  +N P      +    
Sbjct: 155 IENAHIRRTLHMNRTSLKTSKIVSYPKSRSRK--KGGLKDNLIPDKNDP-----DSKECS 207

Query: 125 FQEYIEARTLFSLMETKKLISWPEIRDEFVFSIPEAESDK 164
            QEY   +    L    +L+S      E++ SI  +  D+
Sbjct: 208 NQEYEIMKDNLLLYNHARLMSQDNHSKEYLVSIMFSHYDR 247


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 4/23 (17%)

Query: 261 LQIPPHESWE-DV---HSDDEGY 279
           L+IPPH  W+ DV   +S DEG+
Sbjct: 98  LRIPPHRLWKPDVLMYNSADEGF 120


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 13  RNQQTLSTVAREAAASLAPDSPILAMFKNAALKLNERQDRHERLVKLSR 61
           +N++TL TV       L   + +  M +   +    R DR +R+ ++ R
Sbjct: 347 QNEETLQTVVAMKMMHLPQSNKMNRMHRMNRVNRVNRMDRMDRIDRMDR 395


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.132    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,416
Number of Sequences: 429
Number of extensions: 2985
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 280
length of database: 140,377
effective HSP length: 57
effective length of query: 223
effective length of database: 115,924
effective search space: 25851052
effective search space used: 25851052
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)