GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004639-TA|BGIBMGA004639-PA|IPR000539|Frizzled protein,
IPR000024|Frizzled CRD region, IPR000832|GPCR, family 2, secretin-like
         (488 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   1.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    25   1.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   1.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    25   1.9  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 178 ALWSGLCAASTLMTLTTFLIDSQRFKYPERPIVYL 212
           A+ S  C + TL+T+ T L+   R+    R ++YL
Sbjct: 700 AVPSKFCLSVTLLTVATSLVIVSRYAEKSRRMLYL 734


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 187 STLMTLTTFLIDSQ----RFKYPERPIVYLSACYFMVSLGYLARLALGH 231
           +T++T+TT +  +     +  Y +   VYL  C+ MV    L    +G+
Sbjct: 258 TTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGY 306


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 187 STLMTLTTFLIDSQ----RFKYPERPIVYLSACYFMVSLGYLARLALGH 231
           +T++T+TT +  +     +  Y +   VYL  C+ MV    L    +G+
Sbjct: 258 TTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGY 306


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 187 STLMTLTTFLIDSQ----RFKYPERPIVYLSACYFMVSLGYLARLALGH 231
           +T++T+TT +  +     +  Y +   VYL  C+ MV    L    +G+
Sbjct: 197 TTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGY 245


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.139    0.459 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,740
Number of Sequences: 429
Number of extensions: 5371
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 4
length of query: 488
length of database: 140,377
effective HSP length: 60
effective length of query: 428
effective length of database: 114,637
effective search space: 49064636
effective search space used: 49064636
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 46 (22.6 bits)