GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004638-TA|BGIBMGA004638-PA|IPR013143|PCI/PINT associated
module, IPR000717|Proteasome component region PCI
         (397 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    25   1.5  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    25   1.5  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    25   1.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   4.6  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    22   8.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   8.0  

>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 35  DEHVYNRNLLSSDIATLVT-GNCVAPLDELVIAHLSCLKALYASDYIEAYDHQSICVASV 93
           DE +++  LL++    L+  G C A  +EL       L    A+D  +  D Q   +  V
Sbjct: 35  DEILHSDRLLNNYFKCLMDEGRCTAEGNELK----RVLPDALATDCKKCTDKQREVIKKV 90

Query: 94  VKLLQGQKEENW 105
           +K L   K E W
Sbjct: 91  IKFLVENKPELW 102


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 35  DEHVYNRNLLSSDIATLVT-GNCVAPLDELVIAHLSCLKALYASDYIEAYDHQSICVASV 93
           DE +++  LL++    L+  G C A  +EL       L    A+D  +  D Q   +  V
Sbjct: 35  DEILHSDRLLNNYFKCLMDEGRCTAEGNELK----RVLPDALATDCKKCTDKQREVIKKV 90

Query: 94  VKLLQGQKEENW 105
           +K L   K E W
Sbjct: 91  IKFLVENKPELW 102


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 35  DEHVYNRNLLSSDIATLVT-GNCVAPLDELVIAHLSCLKALYASDYIEAYDHQSICVASV 93
           DE +++  LL++    L+  G C A  +EL       L    A+D  +  D Q   +  V
Sbjct: 35  DEILHSDRLLNNYFKCLMDEGRCTAEGNELK----RVLPDALATDCKKCTDKQREVIKKV 90

Query: 94  VKLLQGQKEENW 105
           +K L   K E W
Sbjct: 91  IKFLVENKPELW 102


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 167 LCLVNQLLKVYFRINKLHLCKPLIRAI 193
           +C+   +L V+FR  + H+  P +R +
Sbjct: 318 ICVTVVVLNVHFRSPQTHVMAPWVRRV 344


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 167 LCLVNQLLKVYFRINKLHLCKPLIRAI 193
           LCL  + +K++F+  ++ L K L RA+
Sbjct: 45  LCLTERQIKIWFQNRRMKLKKEL-RAV 70


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 198 FKDQFPLAQQITYRYFVGRKAMF 220
           +K  FP    IT+   + RK +F
Sbjct: 213 YKGDFPTETDITFYIIIRRKTLF 235


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.137    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,857
Number of Sequences: 429
Number of extensions: 4330
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 6
length of query: 397
length of database: 140,377
effective HSP length: 59
effective length of query: 338
effective length of database: 115,066
effective search space: 38892308
effective search space used: 38892308
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 45 (22.2 bits)