Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA004635-TA|BGIBMGA004635-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
(142 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 73 2e-14
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 50 2e-07
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 50 2e-07
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 46 2e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 45 4e-06
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 43 2e-05
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 43 2e-05
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 41 6e-05
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 41 6e-05
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 41 8e-05
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 40 1e-04
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 40 1e-04
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 38 8e-04
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 37 0.001
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.002
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 36 0.002
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 36 0.003
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 36 0.003
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 36 0.003
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 35 0.006
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 34 0.010
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 34 0.010
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 33 0.017
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 32 0.030
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 31 0.052
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 31 0.068
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 31 0.068
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 31 0.090
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.090
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 30 0.12
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 29 0.21
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 29 0.28
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 28 0.64
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 27 1.1
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 27 1.5
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 26 1.9
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 26 2.6
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 26 2.6
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 3.4
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 25 5.9
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 72.5 bits (170), Expect = 2e-14
Identities = 34/65 (52%), Positives = 45/65 (69%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 60
M YFSQFG V R+ R+R+TG SK YAF+EF VA +VAETM+NYL+ +L++
Sbjct: 121 MRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETMHNYLLYGKLLQCKV 180
Query: 61 IPPDK 65
IP D+
Sbjct: 181 IPEDQ 185
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 49.6 bits (113), Expect = 2e-07
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 60
MT+ F+Q G V +++ TG KGY F EF D + +NN +G R I+ +
Sbjct: 23 MTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNNSELGPRKIRVEF 82
Query: 61 IPPDKRRWAMRYTWNPQNNPVLNTNLKLKKQYNA 94
D RR Y + + + + + YN+
Sbjct: 83 PSNDPRR-NQSYEYTERTDRYMEQQNAHESSYNS 115
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 49.6 bits (113), Expect = 2e-07
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPD 64
F Q G V + +++ +G+ KGY F E+HDPA A +NNY G R ++ + D
Sbjct: 25 FKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNLNNYDAGTRRLRVDFPTAD 84
Query: 65 KRR 67
+ R
Sbjct: 85 QIR 87
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 46.0 bits (104), Expect = 2e-06
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 60
+ YF QFG V +C V+R TGRS+G+ F+ F +P V + ++L GK +
Sbjct: 179 LRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM-SKEHHLDGKIIDPKRA 237
Query: 61 IPPDKR 66
IP +++
Sbjct: 238 IPREEQ 243
Score = 31.9 bits (69), Expect = 0.039
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 4 YFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQ 40
+F+QFG V + ++ + TGR +G+ FV + + + +
Sbjct: 266 FFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVE 302
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 45.2 bits (102), Expect = 4e-06
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK----AAY 60
FS+FG + ++R + TG+SKG+AF+++ D + + M N + RL++ A+Y
Sbjct: 51 FSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRVDHVASY 110
Query: 61 IPPDKRR 67
P K +
Sbjct: 111 KVPQKEK 117
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 43.2 bits (97), Expect = 2e-05
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 60
+ + FS+FG + +C + T SKGY FV F P A T+N L GK+ + Y
Sbjct: 437 LEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFVNY 496
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 42.7 bits (96), Expect = 2e-05
Identities = 20/66 (30%), Positives = 35/66 (53%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 60
+T +FS G + + V+ + TG ++GY FV F AQ A+ + N + R+++ +
Sbjct: 21 LTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDF 80
Query: 61 IPPDKR 66
P KR
Sbjct: 81 ATPRKR 86
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 41.1 bits (92), Expect = 6e-05
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLM 51
FS+FG + +C+VIR + TG S YAF+EF + + M N L+
Sbjct: 264 FSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLI 310
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 41.1 bits (92), Expect = 6e-05
Identities = 16/59 (27%), Positives = 32/59 (54%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPP 63
F +FGG+ + + + TGR+KG+AFV ++D A + ++ Y +++ + P
Sbjct: 222 FRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDGYGWNNLILRCEFSKP 280
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 40.7 bits (91), Expect = 8e-05
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRL-IKAAYIPP 63
F+ FG V N + RRTG KGYA +E+ AQ + N L+ ++L + A++ P
Sbjct: 30 FADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNLSLLDEKLEVDFAFLEP 89
Query: 64 DKR 66
+R
Sbjct: 90 PER 92
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 40.3 bits (90), Expect = 1e-04
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 7/54 (12%)
Query: 4 YFSQFGGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAETMNNYLMGKRLI 56
+F Q G V + +++R + +GRSKG A+VEF H+ +V +A L GKRL+
Sbjct: 259 FFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIA------LSGKRLL 306
Score = 30.7 bits (66), Expect = 0.090
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNY-LMGKRL 55
F FG + + R + RSKG+ ++++ +P A+ E MN + L G+ +
Sbjct: 360 FEPFGDIEFVHLQRDDQN-RSKGFGYIQYRNPISARNALEKMNGFDLAGRNM 410
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 39.9 bits (89), Expect = 1e-04
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 3 QYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQ 40
Q F ++G + RVI ++GRSKGY +V+F P A+
Sbjct: 281 QEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAK 318
Score = 28.7 bits (61), Expect = 0.36
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGK 53
F G + + R+ ++GR KG+ +V F D A+ E +++ G+
Sbjct: 386 FGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGR 434
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 37.5 bits (83), Expect = 8e-04
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLM-GKRLI 56
F+++G + RV+R++ TG+S GYAFV F ++ + ++ G+R++
Sbjct: 120 FTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIV 172
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 36.7 bits (81), Expect = 0.001
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 56
FS FG + + + +G SKGY FV F A +T+N ++GK+ I
Sbjct: 404 FSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRI 455
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 35.9 bits (79), Expect = 0.002
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 4 YFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDP 36
+F + G V + R+ + +GR KGYAFVEF +P
Sbjct: 111 HFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINP 143
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 35.9 bits (79), Expect = 0.002
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 60
FS G + + GRSKGY FV + A E MNN + + I +Y
Sbjct: 119 FSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSY 174
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 35.5 bits (78), Expect = 0.003
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 60
F+ G V R I TGRSKG+ V+F + A E +N Y G R ++ +Y
Sbjct: 300 FTDIGSVIRAR-IAYEPTGRSKGFGVVQFENENDAASSIEKLNGYRYGGRPLQLSY 354
Score = 33.9 bits (74), Expect = 0.010
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 60
+ ++ Q G V NC ++ + G SKG A +E+ A+ +T++N RL+ Y
Sbjct: 82 LKEFMGQVGNVLNCEIL-NLPNGLSKGCAIIEYSTAEEARTAIKTLSNQKFMGRLV---Y 137
Query: 61 IPPDKRR 67
I D+ +
Sbjct: 138 IREDREQ 144
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 35.5 bits (78), Expect = 0.003
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 3 QYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKR 54
+ F+ G V++ RV R T RS GYA+V FH+ + + +N L+ R
Sbjct: 98 ELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGR 149
Score = 33.9 bits (74), Expect = 0.010
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 56
FS FG + +C+V G +KGY FV F A E +N L+ + +
Sbjct: 188 FSAFGKILSCKVAVDE-LGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKV 238
Score = 32.7 bits (71), Expect = 0.022
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVA-QIVAETMNNYLMGKRLIKAAYIPP 63
FS FG +++ +++ + G+SKG+ FV + P A + V E L GK L A
Sbjct: 384 FSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRK 442
Query: 64 DKRR 67
+ RR
Sbjct: 443 EVRR 446
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 35.5 bits (78), Expect = 0.003
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 3 QYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN 48
Q ++ G ++IR+R TG + GY FVEF P A A +MNN
Sbjct: 111 QVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEAS-SAMSMNN 155
Score = 30.7 bits (66), Expect = 0.090
Identities = 14/63 (22%), Positives = 27/63 (42%)
Query: 4 YFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPP 63
+ S++ + +++ +T S+GY FV F D + M + G R I+ P
Sbjct: 206 FASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATP 265
Query: 64 DKR 66
+
Sbjct: 266 KSK 268
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 34.7 bits (76), Expect = 0.006
Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 57
+ +F+ G V+ ++ + TG KG+A++EF +P++ A +N ++ +R +K
Sbjct: 71 LQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVP-NALLLNGSMLHERPLK 126
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 33.9 bits (74), Expect = 0.010
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 3 QYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 35
+YF G + R++R +T KG+A+++F D
Sbjct: 288 RYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKD 320
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 33.9 bits (74), Expect = 0.010
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN 48
+ Q FS+FG V++ R++R T S+G+ F+ F A + +N+
Sbjct: 117 LQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNS 164
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 33.1 bits (72), Expect = 0.017
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 23 GRSKGYAFVEFHDPAVAQIVAETMNNY-LMGKRL 55
G +G AF F+ P AQ+V +T+N Y + G+RL
Sbjct: 240 GIFRGLAFANFYRPEEAQVVVQTLNGYEINGRRL 273
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 32.3 bits (70), Expect = 0.030
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 35
+ ++F Q G + R++ TG+ KG+ FV+F D
Sbjct: 244 LKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPD 278
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 31.5 bits (68), Expect = 0.052
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 23 GRSKGYAFVEFHDPAVAQIVAETMNNY-LMGKRL 55
G +G AF FH P A+ V + +N Y + G+RL
Sbjct: 270 GVFRGLAFANFHSPEEAKTVVQVLNGYEITGRRL 303
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 31.1 bits (67), Expect = 0.068
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQI 41
+ + FG + + ++I++ G SKG+ F EF +P+ A++
Sbjct: 326 VVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEV 366
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 31.1 bits (67), Expect = 0.068
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 3 QYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIP 62
Q FS++ + +V+R R G+++G+ FV F D N +G R +K +
Sbjct: 48 QAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKLSRAT 106
Query: 63 PD 64
D
Sbjct: 107 SD 108
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 30.7 bits (66), Expect = 0.090
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 60
FS +G V + I + +T + +G A V F DP+ A I + + N++ + +K Y
Sbjct: 28 FSTYGTVVD---IVALKTPKMRGQAHVVFFDPSAAAIAMKALKNFIFFGKEMKIQY 80
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 30.7 bits (66), Expect = 0.090
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAA 59
F FG + + + R + + YAFVEF +P A+ E MN ++ R I+ +
Sbjct: 26 FIPFGEIISVALHRKEKAV-DRSYAFVEFDEPEDAKEAMENMNYSILCDRCIRVS 79
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 30.3 bits (65), Expect = 0.12
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 20 RRTGR--SKGYAFVEFHDPAVAQIVAETMNNYLM-GKRL-IKAAYIPPDKRRWAMRY-TW 74
+R G+ S G+ FVEF D A A MN +++ G +L IK ++ D + +
Sbjct: 657 KRPGKYLSMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSS 716
Query: 75 NPQNNPVLNTNLKLKKQYNAVKSDAEELRSA 105
P+ +L NL + A K D + L A
Sbjct: 717 KPKGTKILIKNL----PFEATKKDVQSLLGA 743
Score = 29.9 bits (64), Expect = 0.16
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 35
F FG + + ++T KG+A+++FHD
Sbjct: 343 FGPFGQLEQVHMPIDKKTNNPKGFAYIDFHD 373
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 29.5 bits (63), Expect = 0.21
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 3 QYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIP 62
+ + FG R IR T +++G AFV + + A+ E ++ Y R + Y
Sbjct: 27 EMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSGYNFMDRYLVVHYYN 86
Query: 63 PDKRR 67
P++ +
Sbjct: 87 PERAK 91
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 29.1 bits (62), Expect = 0.28
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 4 YFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 46
Y ++FG VS+ + I T KGY F F + A I M
Sbjct: 315 YTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSALICISAM 357
Score = 24.6 bits (51), Expect = 5.9
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 11 VSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRL 55
+SN RV+R + +S+G F D A+ + NN+++ L
Sbjct: 410 ISN-RVLRDSKE-QSRGVGFARMQDRKTAEDIINKFNNFVLDPAL 452
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 27.9 bits (59), Expect = 0.64
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 8 FG-GVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGK 53
FG GV++ R++ T RS+G+ +VEF LMG+
Sbjct: 114 FGEGVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGEDLMGR 160
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 27.1 bits (57), Expect = 1.1
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 46
++++F+++G + RV+ SR G AF+ + + A AQ E M
Sbjct: 191 VSRHFAEWGDIERIRVLNSR------GIAFITYLNEANAQFAKEAM 230
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 26.6 bits (56), Expect = 1.5
Identities = 16/61 (26%), Positives = 25/61 (40%)
Query: 6 SQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPDK 65
S + ++ ++I TG S+ Y FV F Q M YL R ++ + P
Sbjct: 204 SIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKS 263
Query: 66 R 66
R
Sbjct: 264 R 264
Score = 25.0 bits (52), Expect = 4.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 26 KGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 60
KG FV++ + + A+ TM L+G I+ A+
Sbjct: 332 KGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAW 366
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 26.2 bits (55), Expect = 1.9
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 60
+TQ F F G R++ RR G AFVE+ A + + IK +
Sbjct: 190 LTQIFEAFSGFQEVRMVPGRR-----GIAFVEYDSDREATVAKNGTTGMSLSGNQIKVTF 244
Score = 25.0 bits (52), Expect = 4.5
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 8 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNY-LMGKRLI 56
FG +++R+T R +G AFV F + A + + Y L GK ++
Sbjct: 50 FGSYGKVIDVQARKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPMM 99
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 25.8 bits (54), Expect = 2.6
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 61 IPPDKRRWAMRYTWNPQ-NNPVLNTNLKLKKQYNAVKSDAEELRSAR 106
+P WAM W+P NN + + ++YN + S E +RS +
Sbjct: 392 VPKGVPPWAMSACWSPDGNNIYIGRRNGIVEEYN-IHSGKEPVRSLK 437
>SPBP16F5.06 |||ribosome biogenesis protein
Nop6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 25.8 bits (54), Expect = 2.6
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 5 FSQFGGVSNCRVI-RSRRTGRSKGYAFVEF 33
FS+FG VSN +I +S G + +A++ F
Sbjct: 25 FSRFGSVSNLEIINKSTPVGTIQRFAYLNF 54
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 25.4 bits (53), Expect = 3.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 27 GYAFVEFHDPAVAQIVAET 45
G AF+ F A AQIVA+T
Sbjct: 388 GQAFITFESMATAQIVAQT 406
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 24.6 bits (51), Expect = 5.9
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQ 40
F FG + C I RT S+ +AFVE+ D A+
Sbjct: 27 FEPFGPLIRCD-IPIPRTRTSRPFAFVEYEDSRDAE 61
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.134 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 592,085
Number of Sequences: 5004
Number of extensions: 19725
Number of successful extensions: 104
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 55
Number of HSP's gapped (non-prelim): 55
length of query: 142
length of database: 2,362,478
effective HSP length: 66
effective length of query: 76
effective length of database: 2,032,214
effective search space: 154448264
effective search space used: 154448264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)
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