Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA004635-TA|BGIBMGA004635-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
(142 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 67 4e-12
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 52 1e-07
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 51 3e-07
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 48 3e-06
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 47 4e-06
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 47 4e-06
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 47 4e-06
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 47 4e-06
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 47 4e-06
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 47 6e-06
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 47 6e-06
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 47 6e-06
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 47 6e-06
Z78536-3|CAB01717.1| 270|Caenorhabditis elegans Hypothetical pr... 46 1e-05
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 45 2e-05
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 45 2e-05
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 43 7e-05
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 43 1e-04
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 42 1e-04
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 42 1e-04
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 42 1e-04
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 42 2e-04
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 42 2e-04
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 42 2e-04
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 40 5e-04
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 40 5e-04
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 40 7e-04
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 39 0.002
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 39 0.002
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 39 0.002
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 39 0.002
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 39 0.002
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 39 0.002
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 38 0.003
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 38 0.003
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 38 0.003
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 38 0.003
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 38 0.003
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 38 0.004
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 38 0.004
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 36 0.008
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 36 0.008
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 36 0.011
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 36 0.011
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 36 0.014
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 36 0.014
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 35 0.019
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 35 0.019
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 35 0.019
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 35 0.019
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 35 0.019
Z32683-13|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 35 0.025
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 34 0.033
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 34 0.044
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 32 0.13
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 31 0.24
Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical pr... 31 0.41
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 31 0.41
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 30 0.54
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 30 0.54
AL117204-23|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 30 0.54
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 30 0.54
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 30 0.54
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 30 0.54
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 29 0.95
Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical pr... 28 2.2
Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical pr... 28 2.2
Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical pr... 28 2.2
Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical pr... 28 2.2
Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical pr... 28 2.2
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 28 2.2
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 28 2.2
AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin pr... 28 2.2
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 28 2.2
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 27 5.1
Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical pr... 27 6.7
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 27 6.7
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 27 6.7
AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical ... 27 6.7
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr... 26 8.8
AL117203-18|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical... 26 8.8
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 67.3 bits (157), Expect = 4e-12
Identities = 33/69 (47%), Positives = 45/69 (65%)
Query: 4 YFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPP 63
YF QFG V RV R+RRTG KG+A+V F + AVA+I AE+MN YLM ++ + + P
Sbjct: 51 YFRQFGNVLRIRVARNRRTGNHKGWAYVGFDNKAVAEIAAESMNGYLMFEQRLGCTVMKP 110
Query: 64 DKRRWAMRY 72
+ AMR+
Sbjct: 111 ELIPKAMRH 119
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 52.4 bits (120), Expect = 1e-07
Identities = 24/54 (44%), Positives = 32/54 (59%)
Query: 4 YFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 57
YFSQ G VSN R++ R TGR +G+AFVEF + A AQ + N R ++
Sbjct: 23 YFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALR 76
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 51.2 bits (117), Expect = 3e-07
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 4 YFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 60
YF+ G V+N R++ R TGR +G+AFVEF + A AQ E +N R ++ Y
Sbjct: 25 YFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNY 81
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 48.0 bits (109), Expect = 3e-06
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 57
FS+ G V + +++ R TG+ KGY F+EF D A++ +N Y + R+++
Sbjct: 38 FSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNLNGYELSGRILR 90
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 47.2 bits (107), Expect = 4e-06
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 56
FS+FG ++NC ++R RR+G S YAF+EF + + M+N L+ R I
Sbjct: 261 FSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRI 312
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 47.2 bits (107), Expect = 4e-06
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 4 YFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 47
+FS G ++N R++ R TGR +G+AF+EF + AQ E MN
Sbjct: 24 FFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMN 67
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 47.2 bits (107), Expect = 4e-06
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 56
FS+FG ++NC ++R RR+G S YAF+EF + + M+N L+ R I
Sbjct: 261 FSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRI 312
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 47.2 bits (107), Expect = 4e-06
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 56
FS+FG ++NC ++R RR+G S YAF+EF + + M+N L+ R I
Sbjct: 192 FSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRI 243
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 47.2 bits (107), Expect = 4e-06
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYI 61
FSQ+G V N +IR + TG+SKG+AF+ + D + + N + KR+I+ ++
Sbjct: 58 FSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNFNGISLHKRMIRVDHV 114
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 46.8 bits (106), Expect = 6e-06
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 57
+ + F FG VS+ +VIR T +SKGY FV + A+ E MN +G+R I+
Sbjct: 38 LREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIR 94
Score = 31.5 bits (68), Expect = 0.24
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 3 QYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 60
Q F+ FG ++ R+ + + GYAFV+F + A MNN +G +L++ ++
Sbjct: 145 QGFASFGRITEVRIFKMQ------GYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSW 196
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 46.8 bits (106), Expect = 6e-06
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 57
+ + F FG VS+ +VIR T +SKGY FV + A+ E MN +G+R I+
Sbjct: 48 LREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIR 104
Score = 31.5 bits (68), Expect = 0.24
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 3 QYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 60
Q F+ FG ++ R+ + + GYAFV+F + A MNN +G +L++ ++
Sbjct: 155 QGFASFGRITEVRIFKMQ------GYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSW 206
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 46.8 bits (106), Expect = 6e-06
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 57
+ + F FG VS+ +VIR T +SKGY FV + A+ E MN +G+R I+
Sbjct: 151 LREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIR 207
Score = 34.3 bits (75), Expect = 0.033
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 57
F+Q G V+ +VI G + YAFVEF D A +TMN L+ R +K
Sbjct: 66 FNQIGSVTKTKVIFD---GSNDPYAFVEFSDHGQASQALQTMNKRLLLDREMK 115
Score = 31.5 bits (68), Expect = 0.24
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 3 QYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 60
Q F+ FG ++ R+ + + GYAFV+F + A MNN +G +L++ ++
Sbjct: 258 QGFASFGRITEVRIFKMQ------GYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSW 309
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 46.8 bits (106), Expect = 6e-06
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 57
+ + F FG VS+ +VIR T +SKGY FV + A+ E MN +G+R I+
Sbjct: 119 LREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIR 175
Score = 31.5 bits (68), Expect = 0.24
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 3 QYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 60
Q F+ FG ++ R+ + + GYAFV+F + A MNN +G +L++ ++
Sbjct: 226 QGFASFGRITEVRIFKMQ------GYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSW 277
>Z78536-3|CAB01717.1| 270|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 270
Score = 46.0 bits (104), Expect = 1e-05
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 13/94 (13%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPD 64
F++FG VS +VIR +T +SKGY FV F + A+ MN +GKR ++
Sbjct: 47 FTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAVRT------ 100
Query: 65 KRRWAMRYTWNPQNNPVLNTNLKLKKQYNAVKSD 98
WA R +N+ L ++ +N+ K+D
Sbjct: 101 --NWAAR-----KNSEENRDKLTFEQVFNSTKAD 127
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 45.2 bits (102), Expect = 2e-05
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRL 55
+ YF +FG V+ C V+R T R++G+ F+ F DP+ V + L GK++
Sbjct: 61 LRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKI 115
Score = 36.3 bits (80), Expect = 0.008
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGK 53
M QYF +G V + ++ + T R +G+ FV F VA V E + + GK
Sbjct: 150 MKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGK 202
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 45.2 bits (102), Expect = 2e-05
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRL 55
+ YF +FG V+ C V+R T R++G+ F+ F DP+ V + L GK++
Sbjct: 61 LRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKI 115
Score = 36.3 bits (80), Expect = 0.008
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGK 53
M QYF +G V + ++ + T R +G+ FV F VA V E + + GK
Sbjct: 150 MKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGK 202
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 43.2 bits (97), Expect = 7e-05
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 3 QYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRL-IKAAYI 61
+YF QFG + VI R T +S+GY FV D A A+ + N + G++ + AY+
Sbjct: 53 EYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKDPNPIIDGRKANVNLAYL 112
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 42.7 bits (96), Expect = 1e-04
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 57
+ + F +FG VS ++IR T + KGY FV + A+ + MN +G+R I+
Sbjct: 148 LREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIR 204
Score = 28.7 bits (61), Expect = 1.7
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 17 IRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 60
I RT + +GYAFV+F A MNN +G ++++ ++
Sbjct: 281 INEVRTFKIQGYAFVKFETKESAARAIVQMNNADIGGQIVRCSW 324
Score = 26.6 bits (56), Expect = 6.7
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 47
F+Q G V ++I G + YAFVEF D A + ++ N
Sbjct: 60 FNQIGAVMKAKIIFE---GLNDPYAFVEFSDHNQATLALQSHN 99
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 42.3 bits (95), Expect = 1e-04
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPD 64
F FG + + + TG K +AFVE+ P A + E+MN ++G R +K +
Sbjct: 122 FDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVNSMMFQ 181
Query: 65 KRRWAMRYTWNPQNNPVLNTNLKLKKQY 92
+ R PQ P+++ K K+Y
Sbjct: 182 EMRLPQNM---PQAQPIIDMVQKDAKKY 206
Score = 27.1 bits (57), Expect = 5.1
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 5 FSQFGGVSNCRVIRSRRTGRS-KGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 57
F FG + C++ R+ TGR +G+ ++EF++ MN + +G + ++
Sbjct: 227 FEAFGEIVKCQLARAP-TGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQYLR 279
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 42.3 bits (95), Expect = 1e-04
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPD 64
F FG + + + TG K +AFVE+ P A + E+MN ++G R +K +
Sbjct: 122 FDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVNSMMFQ 181
Query: 65 KRRWAMRYTWNPQNNPVLNTNLKLKKQY 92
+ R PQ P+++ K K+Y
Sbjct: 182 EMRLPQNM---PQAQPIIDMVQKDAKKY 206
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 5 FSQFGGVSNCRVIRSRRTGRS-KGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKA--AYI 61
F FG + C++ R+ TGR +G+ ++EF++ MN + +G + ++
Sbjct: 227 FEAFGEIVKCQLARAP-TGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQYLRVGKCVT 285
Query: 62 PPD 64
PPD
Sbjct: 286 PPD 288
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 42.3 bits (95), Expect = 1e-04
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPD 64
F FG + + + TG K +AFVE+ P A + E+MN ++G R +K +
Sbjct: 122 FDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVNSMMFQ 181
Query: 65 KRRWAMRYTWNPQNNPVLNTNLKLKKQY 92
+ R PQ P+++ K K+Y
Sbjct: 182 EMRLPQNM---PQAQPIIDMVQKDAKKY 206
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 5 FSQFGGVSNCRVIRSRRTGRS-KGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKA--AYI 61
F FG + C++ R+ TGR +G+ ++EF++ MN + +G + ++
Sbjct: 227 FEAFGEIVKCQLARAP-TGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQYLRVGKCVT 285
Query: 62 PPD 64
PPD
Sbjct: 286 PPD 288
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 41.9 bits (94), Expect = 2e-04
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPD 64
F ++G VS +V+ ++TG KG+A VEF P A ++ Y+ R++ +P D
Sbjct: 299 FKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSALDGYVFKGRMMH--ILPGD 356
Query: 65 KRRW-----AMRYTWNPQNNPVLNTNLKLKKQYNAVKSDAEELRSA 105
++R + +NP L K +K+ + K + +E + A
Sbjct: 357 EKRTKEGEEESEVVPDDPDNP-LKAEAKKEKKKKSFKEEKDEQKKA 401
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/56 (23%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDP-AVAQIVAETMNNYLMGKRL 55
+ ++F ++G +S+ ++ + G+ +G+AFV F D + + +A++ + K+L
Sbjct: 19 LRKFFEKYGQISDAS-LKYTKEGKFRGFAFVGFLDEGSASNALAKSNQTFFNSKKL 73
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 41.5 bits (93), Expect = 2e-04
Identities = 21/55 (38%), Positives = 28/55 (50%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRL 55
+ ++FS G V + R+I RTGRSKG +VEF D + LMG L
Sbjct: 41 LEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFWDEESVPLGLALNGQRLMGAPL 95
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 41.5 bits (93), Expect = 2e-04
Identities = 21/55 (38%), Positives = 28/55 (50%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRL 55
+ ++FS G V + R+I RTGRSKG +VEF D + LMG L
Sbjct: 186 LEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFWDEESVPLGLALNGQRLMGAPL 240
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 40.3 bits (90), Expect = 5e-04
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPD 64
FS FG + +C+V G SKGY FV F AQ E +N L+ + + P
Sbjct: 165 FSLFGNILSCKVATDDE-GNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPR 223
Query: 65 KRR 67
+R
Sbjct: 224 AQR 226
Score = 38.7 bits (86), Expect = 0.002
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAA 59
+ +FS FG +++ +V+ GRSKG+ FV F P A MN+ ++G + + A
Sbjct: 359 LRDHFSSFGTITSAKVMVDEN-GRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVA 416
Score = 37.5 bits (83), Expect = 0.004
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 47
FS G V + RV R + S GYA+V F PA A+ +TMN
Sbjct: 77 FSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMN 119
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 40.3 bits (90), Expect = 5e-04
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPD 64
FS FG + +C+V G SKGY FV F AQ E +N L+ + + P
Sbjct: 165 FSLFGNILSCKVATDDE-GNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPR 223
Query: 65 KRR 67
+R
Sbjct: 224 AQR 226
Score = 38.7 bits (86), Expect = 0.002
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAA 59
+ +FS FG +++ +V+ GRSKG+ FV F P A MN+ ++G + + A
Sbjct: 359 LRDHFSSFGTITSAKVMVDEN-GRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVA 416
Score = 37.5 bits (83), Expect = 0.004
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 47
FS G V + RV R + S GYA+V F PA A+ +TMN
Sbjct: 77 FSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMN 119
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 39.9 bits (89), Expect = 7e-04
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPP 63
F+ G + +C+++R + TG+S GY FV + A + N + + IK +Y P
Sbjct: 62 FTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSFNGLRLQNKTIKVSYARP 120
Score = 34.3 bits (75), Expect = 0.033
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 3 QYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN-NYLMGKRL 55
Q FSQFG + N +++R T + KGYAFV + A ++N L GK L
Sbjct: 392 QLFSQFGAIVNVKILRD-LTQQCKGYAFVSMSNYTEAYNAMLSLNGTNLAGKTL 444
Score = 33.1 bits (72), Expect = 0.077
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 47
F FG + R++ TG SKG FV F A + +T+N
Sbjct: 148 FRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLN 190
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/43 (46%), Positives = 24/43 (55%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 47
FS G V + RV R T S GYA+V F PA A+ +TMN
Sbjct: 52 FSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMN 94
Score = 38.7 bits (86), Expect = 0.002
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLM-GKRLIKAAYIPP 63
FS FG + +C+V G SKGY FV F AQ + +N L+ GK++ + P
Sbjct: 140 FSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPR 198
Query: 64 DKR 66
+R
Sbjct: 199 AQR 201
Score = 35.9 bits (79), Expect = 0.011
Identities = 14/48 (29%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN 48
+ + F++FG +++C V+ G+SKG+ FV F +P A+ + +++
Sbjct: 229 LEKVFAKFGNITSCEVMTVE--GKSKGFGFVAFANPEEAETAVQALHD 274
Score = 33.1 bits (72), Expect = 0.077
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLM 51
+ + F +G +++ +V+ GRSKG+ FV F P A MN+ ++
Sbjct: 333 LKKQFESYGNITSAKVMTDEN-GRSKGFGFVCFEKPEEATSAVTEMNSKMV 382
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/43 (46%), Positives = 24/43 (55%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 47
FS G V + RV R T S GYA+V F PA A+ +TMN
Sbjct: 52 FSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMN 94
Score = 35.9 bits (79), Expect = 0.011
Identities = 14/48 (29%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN 48
+ + F++FG +++C V+ G+SKG+ FV F +P A+ + +++
Sbjct: 169 LEKLFAKFGNITSCEVMTVE--GKSKGFGFVAFANPEEAETAVQALHD 214
Score = 33.1 bits (72), Expect = 0.077
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLM 51
+ + F +G +++ +V+ GRSKG+ FV F P A MN+ ++
Sbjct: 273 LKKQFESYGNITSAKVMTDEN-GRSKGFGFVCFEKPEEATSAVTEMNSKMV 322
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 38.7 bits (86), Expect = 0.002
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLM-GKRLIKAAYIPP 63
FS FG + +C+V G SKGY FV F AQ + +N L+ GK++ + P
Sbjct: 77 FSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPR 135
Query: 64 DKR 66
+R
Sbjct: 136 AQR 138
Score = 35.9 bits (79), Expect = 0.011
Identities = 14/48 (29%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN 48
+ + F++FG +++C V+ G+SKG+ FV F +P A+ + +++
Sbjct: 166 LEKLFAKFGNITSCEVMTVE--GKSKGFGFVAFANPEEAETAVQALHD 211
Score = 33.1 bits (72), Expect = 0.077
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLM 51
+ + F +G +++ +V+ GRSKG+ FV F P A MN+ ++
Sbjct: 270 LKKQFESYGNITSAKVMTDEN-GRSKGFGFVCFEKPEEATSAVTEMNSKMV 319
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/43 (46%), Positives = 24/43 (55%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 47
FS G V + RV R T S GYA+V F PA A+ +TMN
Sbjct: 52 FSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMN 94
Score = 38.7 bits (86), Expect = 0.002
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLM-GKRLIKAAYIPP 63
FS FG + +C+V G SKGY FV F AQ + +N L+ GK++ + P
Sbjct: 140 FSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPR 198
Query: 64 DKR 66
+R
Sbjct: 199 AQR 201
Score = 35.9 bits (79), Expect = 0.011
Identities = 14/48 (29%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN 48
+ + F++FG +++C V+ G+SKG+ FV F +P A+ + +++
Sbjct: 229 LEKLFAKFGNITSCEVMTVE--GKSKGFGFVAFANPEEAETAVQALHD 274
Score = 33.1 bits (72), Expect = 0.077
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLM 51
+ + F +G +++ +V+ GRSKG+ FV F P A MN+ ++
Sbjct: 333 LKKQFESYGNITSAKVMTDEN-GRSKGFGFVCFEKPEEATSAVTEMNSKMV 382
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRL-IKAA 59
++ +F+Q+G V+ +V R GRS+G+AFVEF ++ + GK + +K A
Sbjct: 45 LSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPA 104
Query: 60 YIPPDKR 66
+K+
Sbjct: 105 KSRENKK 111
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRL-IKAA 59
++ +F+Q+G V+ +V R GRS+G+AFVEF ++ + GK + +K A
Sbjct: 45 LSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPA 104
Query: 60 YIPPDKR 66
+K+
Sbjct: 105 KSRENKK 111
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 37.9 bits (84), Expect = 0.003
Identities = 18/66 (27%), Positives = 33/66 (50%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 60
M +++SQFG +++ V+R T RS+G+ FV F + + + GK +
Sbjct: 39 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRA 98
Query: 61 IPPDKR 66
+P D +
Sbjct: 99 VPRDDK 104
Score = 34.7 bits (76), Expect = 0.025
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 35
+T+YF+++G V+ +I + T + +G+ FV F D
Sbjct: 130 LTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD 164
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 37.9 bits (84), Expect = 0.003
Identities = 18/66 (27%), Positives = 33/66 (50%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 60
M +++SQFG +++ V+R T RS+G+ FV F + + + GK +
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRA 60
Query: 61 IPPDKR 66
+P D +
Sbjct: 61 VPRDDK 66
Score = 34.7 bits (76), Expect = 0.025
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 35
+T+YF+++G V+ +I + T + +G+ FV F D
Sbjct: 92 LTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD 126
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 37.9 bits (84), Expect = 0.003
Identities = 18/66 (27%), Positives = 33/66 (50%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 60
M +++SQFG +++ V+R T RS+G+ FV F + + + GK +
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRA 60
Query: 61 IPPDKR 66
+P D +
Sbjct: 61 VPRDDK 66
Score = 34.7 bits (76), Expect = 0.025
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 35
+T+YF+++G V+ +I + T + +G+ FV F D
Sbjct: 92 LTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD 126
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 37.9 bits (84), Expect = 0.003
Identities = 18/66 (27%), Positives = 33/66 (50%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 60
M +++SQFG +++ V+R T RS+G+ FV F + + + GK +
Sbjct: 39 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRA 98
Query: 61 IPPDKR 66
+P D +
Sbjct: 99 VPRDDK 104
Score = 34.7 bits (76), Expect = 0.025
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 35
+T+YF+++G V+ +I + T + +G+ FV F D
Sbjct: 130 LTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD 164
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 37.9 bits (84), Expect = 0.003
Identities = 18/66 (27%), Positives = 33/66 (50%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 60
M +++SQFG +++ V+R T RS+G+ FV F + + + GK +
Sbjct: 39 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRA 98
Query: 61 IPPDKR 66
+P D +
Sbjct: 99 VPRDDK 104
Score = 34.7 bits (76), Expect = 0.025
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 35
+T+YF+++G V+ +I + T + +G+ FV F D
Sbjct: 130 LTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD 164
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 37.5 bits (83), Expect = 0.004
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAETMNNYLMGKR 54
+T + +Q G V R++R + TG+ KG+AFV F D +V+ +A +M M KR
Sbjct: 263 ITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNFKQDSSVS--LALSMETIKMEKR 315
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 37.5 bits (83), Expect = 0.004
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 57
+ + F ++ +V+R RT +SKGY FV F D M+ +G R IK
Sbjct: 219 LAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPIK 275
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 36.3 bits (80), Expect = 0.008
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 6 SQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 47
S++G +++ + I + T KGY FV+F P A + +N
Sbjct: 128 SKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLN 169
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 36.3 bits (80), Expect = 0.008
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 6 SQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 47
S++G +++ + I + T KGY FV+F P A + +N
Sbjct: 102 SKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLN 143
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 35.9 bits (79), Expect = 0.011
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 57
+ Q F+ FG + + +V R T +SK + FV + + +Q MN + +G + +K
Sbjct: 445 LIQMFAPFGHIVSAKVFVDRATNQSKCFGFVSYDNIHSSQAAITAMNGFQIGMKRLK 501
Score = 27.1 bits (57), Expect = 5.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEF 33
F QFG + +++ + TG KG AF+ +
Sbjct: 49 FEQFGKIYEFTILKDKYTGMHKGCAFLTY 77
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 35.9 bits (79), Expect = 0.011
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 57
+ Q F+ FG + + +V R T +SK + FV + + +Q MN + +G + +K
Sbjct: 445 LIQMFAPFGHIVSAKVFVDRATNQSKCFGFVSYDNIHSSQAAITAMNGFQIGMKRLK 501
Score = 27.1 bits (57), Expect = 5.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEF 33
F QFG + +++ + TG KG AF+ +
Sbjct: 49 FEQFGKIYEFTILKDKYTGMHKGCAFLTY 77
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 35.5 bits (78), Expect = 0.014
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN 48
+ + F++FG + +C V+R + G+S+G AFV F + + A + + M++
Sbjct: 158 LREIFAKFGHIEDCSVLRDQ-DGKSRGCAFVTFTNRSCAVVATKEMHH 204
Score = 34.3 bits (75), Expect = 0.033
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 57
F+ FGG+ + +V + T SK + FV + + A MN + +G + +K
Sbjct: 519 FAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLK 571
Score = 32.7 bits (71), Expect = 0.10
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFH 34
F ++G V +C ++R + T SKG FV F+
Sbjct: 75 FEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 35.5 bits (78), Expect = 0.014
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN 48
+ + F++FG + +C V+R + G+S+G AFV F + + A + + M++
Sbjct: 158 LREIFAKFGHIEDCSVLRDQ-DGKSRGCAFVTFTNRSCAVVATKEMHH 204
Score = 34.3 bits (75), Expect = 0.033
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 57
F+ FGG+ + +V + T SK + FV + + A MN + +G + +K
Sbjct: 519 FAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLK 571
Score = 32.7 bits (71), Expect = 0.10
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFH 34
F ++G V +C ++R + T SKG FV F+
Sbjct: 75 FEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 35.1 bits (77), Expect = 0.019
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 5 FSQFGGVSNC-RVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 60
FS FG + +++R +G SKG+AF+ F + E MN + R I +Y
Sbjct: 120 FSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSY 176
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 35.1 bits (77), Expect = 0.019
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 5 FSQFGGVSNC-RVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 60
FS FG + +++R +G SKG+AF+ F + E MN + R I +Y
Sbjct: 130 FSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSY 186
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 35.1 bits (77), Expect = 0.019
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 4 YFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPP 63
YFSQ+G V + VIR T S+G+ FV F A+ + L GK + IP
Sbjct: 68 YFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPR 127
Query: 64 DK 65
++
Sbjct: 128 EQ 129
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 35.1 bits (77), Expect = 0.019
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 4 YFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPP 63
YFSQ+G V + VIR T S+G+ FV F A+ + L GK + IP
Sbjct: 88 YFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPR 147
Query: 64 DK 65
++
Sbjct: 148 EQ 149
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 35.1 bits (77), Expect = 0.019
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 4 YFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPP 63
YFSQ+G V + VIR T S+G+ FV F A+ + L GK + IP
Sbjct: 89 YFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPR 148
Query: 64 DK 65
++
Sbjct: 149 EQ 150
>Z32683-13|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 34.7 bits (76), Expect = 0.025
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVA-QIVAETMNNYLMGKRL 55
FS++G + N + RRTG KGYA VE+ A + + ++ + L+G+ +
Sbjct: 75 FSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQSNDTDLLGQNV 126
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 34.3 bits (75), Expect = 0.033
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 57
F+ FGG+ + +V + T SK + FV + + A MN + +G + +K
Sbjct: 355 FAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLK 407
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 33.9 bits (74), Expect = 0.044
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 6 SQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM-NNYLMGKRLIKAAYIPPD 64
S+FG + + + + +G SKG AFV F P A E + + ++ RL+KA P
Sbjct: 284 SKFGKIDLAIICKYKDSGHSKGTAFVHFSTPIEASNCIEGVEDGVIIDNRLVKANLAIPR 343
Query: 65 K 65
K
Sbjct: 344 K 344
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 32.3 bits (70), Expect = 0.13
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFH 34
F +FG ++ C ++ R +G S+G+ F+ F+
Sbjct: 96 FGEFGEINKCDLVYDRPSGNSRGFGFIYFN 125
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 31.5 bits (68), Expect = 0.24
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 3 QYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRL 55
Q+F G VS + R +G KG+A+VEF + Q ++ L G+++
Sbjct: 96 QHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNALAMTDSLLRGRQI 148
>Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical
protein C50B8.1 protein.
Length = 114
Score = 30.7 bits (66), Expect = 0.41
Identities = 15/62 (24%), Positives = 27/62 (43%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 60
+ YF ++G + + + TG +G+A + F A E + + G R+ Y
Sbjct: 41 LEHYFKRYGSIQSVNMFYDPDTGLHRGFASITFDSKDGANKAIEQRPHVIDGDRVDVEPY 100
Query: 61 IP 62
IP
Sbjct: 101 IP 102
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 30.7 bits (66), Expect = 0.41
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD-PAVAQIVAETMNNYLMGKRLIKAAYIPP 63
F + G V + R + TG KG+AFV F A+ +AE +N+ M ++K + P
Sbjct: 196 FGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAE-LNDIRMYHMVLKVEWTRP 254
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 30.3 bits (65), Expect = 0.54
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 23 GRSKGYAFVEFHDPAVAQIVAETMNNYLMG-KRLI 56
G SKGYAF E+ DP + +N +G K+L+
Sbjct: 328 GNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLV 362
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 30.3 bits (65), Expect = 0.54
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNY 49
F+QF G+ + R++ +R G AFVEF ++A T+NN+
Sbjct: 152 FNQFAGLKDIRMVPNR-----PGIAFVEFDTDSLAIPARTTLNNF 191
>AL117204-23|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 30.3 bits (65), Expect = 0.54
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN-NYLMGKRLIKAAYIPP 63
F FG V + +G+ +G+ FVEF A + + MN + L GK + PP
Sbjct: 31 FIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDNMNESELFGKTIRVNFARPP 90
Query: 64 DKRRWAMRYTW 74
+ + W
Sbjct: 91 KATERSQKPVW 101
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 30.3 bits (65), Expect = 0.54
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 23 GRSKGYAFVEFHDPAVAQIVAETMNNYLMG-KRLI 56
G SKGYAF E+ DP + +N +G K+L+
Sbjct: 328 GNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLV 362
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 30.3 bits (65), Expect = 0.54
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 23 GRSKGYAFVEFHDPAVAQIVAETMNNYLMG-KRLI 56
G SKGYAF E+ DP + +N +G K+L+
Sbjct: 303 GNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLV 337
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 30.3 bits (65), Expect = 0.54
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 23 GRSKGYAFVEFHDPAVAQIVAETMNNYLMG-KRLI 56
G SKGYAF E+ DP + +N +G K+L+
Sbjct: 306 GNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLV 340
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 29.5 bits (63), Expect = 0.95
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLM-GKRLIKAAYIPP 63
F +G + ++ G+ +GYAF+E+ D A + + + GKRL+
Sbjct: 124 FEAYGKIKKLTMVHDE-AGKPRGYAFIEYSDKAEMHTAYKKADGIKVDGKRLV------V 176
Query: 64 DKRRWAMRYTWNPQ 77
D R + TW P+
Sbjct: 177 DYERGRTQKTWLPR 190
>Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical
protein T11G6.8 protein.
Length = 408
Score = 28.3 bits (60), Expect = 2.2
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN--YLMGKRL 55
+ +F Q+G + RV+ KG AF+EF A+ AE N ++ GKRL
Sbjct: 255 LNDFFYQYGDIRCLRVLTE------KGCAFIEFTTREAAERAAERSFNKTFIKGKRL 305
>Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical
protein F15G9.4b protein.
Length = 5198
Score = 28.3 bits (60), Expect = 2.2
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 9 GGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYI 61
G + + ++R Y V FHDP + +I+ T + Y M R + Y+
Sbjct: 57 GAAKIFKTVMAQREKLIYNYIMVPFHDPYLGEIINTTDSTYFM--RQLSKVYV 107
>Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical
protein F15G9.4a protein.
Length = 5175
Score = 28.3 bits (60), Expect = 2.2
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 9 GGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYI 61
G + + ++R Y V FHDP + +I+ T + Y M R + Y+
Sbjct: 57 GAAKIFKTVMAQREKLIYNYIMVPFHDPYLGEIINTTDSTYFM--RQLSKVYV 107
>Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical
protein F15G9.4b protein.
Length = 5198
Score = 28.3 bits (60), Expect = 2.2
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 9 GGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYI 61
G + + ++R Y V FHDP + +I+ T + Y M R + Y+
Sbjct: 57 GAAKIFKTVMAQREKLIYNYIMVPFHDPYLGEIINTTDSTYFM--RQLSKVYV 107
>Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical
protein F15G9.4a protein.
Length = 5175
Score = 28.3 bits (60), Expect = 2.2
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 9 GGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYI 61
G + + ++R Y V FHDP + +I+ T + Y M R + Y+
Sbjct: 57 GAAKIFKTVMAQREKLIYNYIMVPFHDPYLGEIINTTDSTYFM--RQLSKVYV 107
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 28.3 bits (60), Expect = 2.2
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 33
+ ++F +F V + ++++S G+SKGY F+ F
Sbjct: 82 LREHFEKFFAVKDVKMVKSL-DGQSKGYGFITF 113
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 28.3 bits (60), Expect = 2.2
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 5 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNY 49
F + G + + R++ +G S+GYAFV + + A A+T + +
Sbjct: 220 FEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKTYDGH 264
>AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin
precursor protein.
Length = 5198
Score = 28.3 bits (60), Expect = 2.2
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 9 GGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYI 61
G + + ++R Y V FHDP + +I+ T + Y M R + Y+
Sbjct: 57 GAAKIFKTVMAQREKLIYNYIMVPFHDPYLGEIINTTDSTYFM--RQLSKVYV 107
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 28.3 bits (60), Expect = 2.2
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 1 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 33
+ ++F +F V + ++++S G+SKGY F+ F
Sbjct: 83 LREHFEKFFAVKDVKMVKSL-DGQSKGYGFITF 114
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 3 QYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 33
++F+ G V+ + + + TG K +AFVEF
Sbjct: 64 EHFAVCGKVARVTIPKDKFTGYQKNFAFVEF 94
>Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical
protein F44G4.4a protein.
Length = 411
Score = 26.6 bits (56), Expect = 6.7
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 3 QYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKR 54
+YF G V C + R + G SKG+ FV V + + G+R
Sbjct: 191 KYFEDIGTVVFCEIKR-KSDGNSKGFGFVRMSSVGEQNKVLAIPQHMIDGRR 241
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 21 RTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 60
++GR +AFVEF D A+ + Y R I+ +
Sbjct: 41 KSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEF 80
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 21 RTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 60
++GR +AFVEF D A+ + Y R I+ +
Sbjct: 41 KSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEF 80
>AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical
protein ZK616.1 protein.
Length = 491
Score = 26.6 bits (56), Expect = 6.7
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 2 TQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYI 61
T+ + FGG+++ V + + GY FV F A AQ M+ + +LI ++
Sbjct: 110 TELYQAFGGITDGVV----QCHVADGYGFVLFDTRANAQKKIVEMDGKTLNGKLISVSWA 165
Query: 62 PPD 64
PD
Sbjct: 166 RPD 168
>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 26.2 bits (55), Expect = 8.8
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 18 RSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPDKRRWAMRYTWNPQ 77
+S R G + + ++E HD VA+ + + + + A IP +K + Y +
Sbjct: 537 KSTRKGLEQ-FKWLEIHD-MVAECIDTIKARSKLDRGAVSANEIPRNKNSIFLTYNNGQK 594
Query: 78 NNPVLNTNLKLKKQYNAVKSDAEE 101
N TN K QY + + +E
Sbjct: 595 GNDNQRTNNYTKYQYKPPQKNEKE 618
>AL117203-18|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 26.2 bits (55), Expect = 8.8
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 18 RSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPDKRRWAMRYTWNPQ 77
+S R G + + ++E HD VA+ + + + + A IP +K + Y +
Sbjct: 537 KSTRKGLEQ-FKWLEIHD-MVAECIDTIKARSKLDRGAVSANEIPRNKNSIFLTYNNGQK 594
Query: 78 NNPVLNTNLKLKKQYNAVKSDAEE 101
N TN K QY + + +E
Sbjct: 595 GNDNQRTNNYTKYQYKPPQKNEKE 618
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.134 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,143,254
Number of Sequences: 27539
Number of extensions: 103118
Number of successful extensions: 331
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 208
Number of HSP's gapped (non-prelim): 126
length of query: 142
length of database: 12,573,161
effective HSP length: 75
effective length of query: 67
effective length of database: 10,507,736
effective search space: 704018312
effective search space used: 704018312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)
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