GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004635-TA|BGIBMGA004635-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
         (142 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   3.8  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   3.8  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    20   8.8  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 72  YTWNPQNNPVLNTNLKLKKQYNAV 95
           Y +N  NN   N N   K  YN +
Sbjct: 94  YKYNYNNNNYNNNNYNKKLYYNII 117


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 72  YTWNPQNNPVLNTNLKLKKQYNAV 95
           Y +N  NN   N N   K  YN +
Sbjct: 94  YKYNYNNNNYNNNNYNKKLYYNII 117


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 83 NTNLKLKKQYNAVK 96
          N  +KLKK+  AVK
Sbjct: 58 NRRMKLKKELRAVK 71


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,669
Number of Sequences: 429
Number of extensions: 1679
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 142
length of database: 140,377
effective HSP length: 52
effective length of query: 90
effective length of database: 118,069
effective search space: 10626210
effective search space used: 10626210
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)