GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004626-TA|BGIBMGA004626-PA|IPR001632|G-protein, beta
subunit, IPR001680|WD-40 repeat, IPR011046|WD40-like
         (340 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   2.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   5.0  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 187 VMSLSLAPDQRTFVSGACDASAKLWDVRDCT 217
           V SL  +PD   F S AC +   L ++ + T
Sbjct: 31  VKSLVCSPDLSVFTSPACGSETPLTNIEEKT 61


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 1    MNELDSLRQEAETLKNAIRDARKAACDTSLA 31
            + + D +RQE    +N I D+     DT ++
Sbjct: 1645 LQDHDCIRQERTQQRNVISDSESGRLDTEMS 1675


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 12/34 (35%), Positives = 15/34 (44%)

Query: 289 YDDFNCNVWDSMKSERAGILAGHDNRVSCLGVTE 322
           + D  C   DSM +         + R SCLG TE
Sbjct: 351 HSDSCCLCLDSMNAVIRNFNESENRRNSCLGSTE 384


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.132    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,808
Number of Sequences: 429
Number of extensions: 3536
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 3
length of query: 340
length of database: 140,377
effective HSP length: 58
effective length of query: 282
effective length of database: 115,495
effective search space: 32569590
effective search space used: 32569590
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)