GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004625-TA|BGIBMGA004625-PA|IPR001807|Cl- channel,
voltage gated
         (820 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    27   0.62 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   3.3  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   7.6  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          23   7.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   7.6  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 27.1 bits (57), Expect = 0.62
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 78  ITAILNFAMDRGIAICNNARMWMYNDLATSTFSQYVAWVSLPVCLILFA 126
           +  I+ F+M+R +AIC+  R++  + L         AW+   +  I FA
Sbjct: 129 VLTIVAFSMERYLAICHPLRVYTISGLKRPIRFILAAWLIALISAIPFA 177


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 522 LLKENKAIKSFPLVDSPASMVLLGSIHRWELVRVIERQVGRS 563
           L K  K  K  P+VD+P S   L  I+      V ER+V ++
Sbjct: 299 LAKMEKTSKPLPMVDNPESTGNLVYIYNNPFSDVEERRVSKT 340


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 79  TAILNFAMDRGIAICNNARMWMYNDL 104
           T I N A+D G   CN+A  +M ++L
Sbjct: 188 TFIANIAVDLGKGGCNDAFAYMSDEL 213


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 8/77 (10%)

Query: 751 IDPAPFQLVERT--SLLKLRKAIE---DVNSGVLTVAXXXXXXXXXXX--XIIKVPSTQP 803
           +DP PF  VE T  S+ +  +++E   D +SG   V+              II +P T+ 
Sbjct: 42  VDPLPFG-VENTISSVPQPPRSLEGSYDSSSGDSPVSSHSSNGIHTGFGGSIITIPPTRK 100

Query: 804 APPSDSETAKLTTSEKT 820
            PP    TA +T   +T
Sbjct: 101 LPPLHPHTAMVTHLPQT 117


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 673 GGLSDQLTPGLPRSPSINKKVQLPRERV 700
           G + +    G PRSP  N +  + RE++
Sbjct: 312 GSVHNGSNNGSPRSPESNSRCSVKREKI 339


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.137    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,219
Number of Sequences: 429
Number of extensions: 9049
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 5
length of query: 820
length of database: 140,377
effective HSP length: 63
effective length of query: 757
effective length of database: 113,350
effective search space: 85805950
effective search space used: 85805950
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 48 (23.4 bits)