GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004620-TA|BGIBMGA004620-PA|IPR013129|Transcription
factor jumonji, IPR003347|Transcription factor jumonji/aspartyl
beta-hydroxylase
         (1024 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   7.2  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    24   7.2  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    24   7.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   9.6  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 7.2
 Identities = 13/43 (30%), Positives = 18/43 (41%)

Query: 305 LRYPLFEAMHWYAGAHLLTMLRRHNEEIQDEDFIISESCVQSA 347
           L Y     M W     L+T LRR+ +      F++    VQ A
Sbjct: 53  LLYQDVHVMIWIGFGFLMTFLRRYGQSAVGLTFLLGAILVQVA 95


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 23.8 bits (49), Expect = 7.2
 Identities = 15/41 (36%), Positives = 19/41 (46%)

Query: 120 VDYFETPPEHRDEKVLNVLSLEFSETKLSGLVNPPHVITRL 160
           V + ET P   D K   V S+E +  K    VN    +TRL
Sbjct: 65  VPFEETLPSLPDRKFQTVTSIEGNTFKTETQVNDSLKVTRL 105


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 23.8 bits (49), Expect = 7.2
 Identities = 15/41 (36%), Positives = 19/41 (46%)

Query: 120 VDYFETPPEHRDEKVLNVLSLEFSETKLSGLVNPPHVITRL 160
           V + ET P   D K   V S+E +  K    VN    +TRL
Sbjct: 67  VPFEETLPSLPDRKFQTVTSIEGNTFKTETQVNDSLKVTRL 107


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)

Query: 470 DNKDGGYQDRYLQNV-EYSNG 489
           +N DG Y+ RY  NV  Y NG
Sbjct: 117 NNADGNYEVRYKSNVLIYPNG 137


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.131    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 286,325
Number of Sequences: 429
Number of extensions: 13288
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 6
length of query: 1024
length of database: 140,377
effective HSP length: 65
effective length of query: 959
effective length of database: 112,492
effective search space: 107879828
effective search space used: 107879828
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 48 (23.4 bits)