GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004618-TA|BGIBMGA004618-PA|IPR001839|Transforming growth
factor beta, IPR002405|Inhibin, alpha subunit, IPR002400|Growth
factor, cystine knot
         (361 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   4.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   4.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   5.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   7.1  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 289 GSCAPISAVTTSKSYHHDIIRKYFYTVS 316
           G CA  S V + +S+ +D+  +++Y  S
Sbjct: 619 GPCAIKSVVPSDESHWNDLAMEFYYNRS 646


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 289 GSCAPISAVTTSKSYHHDIIRKYFYTVS 316
           G CA  S V + +S+ +D+  +++Y  S
Sbjct: 657 GPCAIKSVVPSDESHWNDLAMEFYYNRS 684


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 317 ERVAEFKPCCAPTTFSSLQLLYIDSTNTVTQKTLPNMVVESC 358
           ER  + KP  A T + S + + I+S+N    KT PN  V  C
Sbjct: 552 ERFFKSKPPVA-TMYGSDEEI-INSSNDEGGKTSPNSAVRKC 591


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 191 ELAWAVRVWLEGRQRLHT 208
           E AW   VW +GR +  T
Sbjct: 419 EPAWKTHVWKKGRDKKST 436


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.136    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,277
Number of Sequences: 429
Number of extensions: 4801
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 4
length of query: 361
length of database: 140,377
effective HSP length: 59
effective length of query: 302
effective length of database: 115,066
effective search space: 34749932
effective search space used: 34749932
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 44 (21.8 bits)