GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004615-TA|BGIBMGA004615-PA|IPR003663|Sugar transporter,
IPR011701|Major facilitator superfamily MFS_1, IPR007114|Major
facilitator superfamily, IPR005829|Sugar transporter superfamily
         (504 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   2.6  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    24   3.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   5.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   7.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 208  EGFFWLRGKNAKTEHELERMITSQKMT 234
            EG F L  + AKT  E+  +I ++K+T
Sbjct: 1076 EGPFRLNVETAKTNEEMWELIDTEKLT 1102


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 166 CFTWQISALLCSLVTFISLCLI 187
           C TW    ++CS  + ++LC I
Sbjct: 98  CDTWIAFDVMCSTASILNLCAI 119


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 354 YVYAKQAGILTYDSQWIPITLIGIYMFSLTV 384
           YVYA+++      ++W+ I    +Y FS T+
Sbjct: 293 YVYAQESDYYPDLNEWLYILSGCLYYFSTTI 323


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 412 LALSLNFFIAVKCFPVLSSAIGLSFTYFLYAGIVTICMVVVWI 454
           L+L++ F +  +  P  S  + L   Y L+  ++    VVV I
Sbjct: 276 LSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMVLVTLSVVVTI 318


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.141    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,086
Number of Sequences: 429
Number of extensions: 5468
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 6
length of query: 504
length of database: 140,377
effective HSP length: 61
effective length of query: 443
effective length of database: 114,208
effective search space: 50594144
effective search space used: 50594144
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 46 (22.6 bits)