GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004614-TA|BGIBMGA004614-PA|IPR001023|Heat shock protein
Hsp70, IPR013126|Heat shock protein 70
         (555 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    27   0.41 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   6.6  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 27.1 bits (57), Expect = 0.41
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 323 KLDKSQIHDVVLVGGSTRIPKVQTMLQNFFCG 354
           K D+S  HD V++GGS  +   +  + +  CG
Sbjct: 253 KCDESSPHDQVIIGGSNGLDTSKVHIIDSICG 284


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 77  DPKIQQDMKHWPF 89
           DP + +D +HW F
Sbjct: 855 DPAVYEDWRHWKF 867


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.133    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,212
Number of Sequences: 429
Number of extensions: 4834
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 555
length of database: 140,377
effective HSP length: 61
effective length of query: 494
effective length of database: 114,208
effective search space: 56418752
effective search space used: 56418752
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 46 (22.6 bits)