Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA004612-TA|BGIBMGA004612-PA|IPR009079|Four-helical
cytokine, IPR001404|Heat shock protein Hsp90, IPR003594|ATP-binding
region, ATPase-like
(716 letters)
Database: bee
429 sequences; 140,377 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 25 1.6
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 25 2.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 25 2.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 25 2.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 2.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 2.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 25 2.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 25 2.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 25 2.8
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 24 5.0
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 24 5.0
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 24 5.0
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 8.7
AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. 23 8.7
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 25.4 bits (53), Expect = 1.6
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 165 FTVRPDSGEPLGRGTKIVL 183
FT+ PDSGE L G I+L
Sbjct: 253 FTLPPDSGEKLSLGVTILL 271
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 24.6 bits (51), Expect = 2.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 165 FTVRPDSGEPLGRGTKIVL 183
FT+ PDSGE L G I+L
Sbjct: 216 FTLPPDSGEKLTLGVTILL 234
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 24.6 bits (51), Expect = 2.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 165 FTVRPDSGEPLGRGTKIVL 183
FT+ PDSGE L G I+L
Sbjct: 216 FTLPPDSGEKLTLGVTILL 234
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 24.6 bits (51), Expect = 2.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 165 FTVRPDSGEPLGRGTKIVL 183
FT+ PDSGE L G I+L
Sbjct: 216 FTLPPDSGEKLTLGVTILL 234
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 24.6 bits (51), Expect = 2.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 165 FTVRPDSGEPLGRGTKIVL 183
FT+ PDSGE L G I+L
Sbjct: 216 FTLPPDSGEKLTLGVTILL 234
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 24.6 bits (51), Expect = 2.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 165 FTVRPDSGEPLGRGTKIVL 183
FT+ PDSGE L G I+L
Sbjct: 216 FTLPPDSGEKLTLGVTILL 234
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 24.6 bits (51), Expect = 2.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 165 FTVRPDSGEPLGRGTKIVL 183
FT+ PDSGE L G I+L
Sbjct: 216 FTLPPDSGEKLTLGVTILL 234
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.6 bits (51), Expect = 2.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 165 FTVRPDSGEPLGRGTKIVL 183
FT+ PDSGE L G I+L
Sbjct: 284 FTLPPDSGEKLTLGVTILL 302
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.6 bits (51), Expect = 2.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 165 FTVRPDSGEPLGRGTKIVL 183
FT+ PDSGE L G I+L
Sbjct: 284 FTLPPDSGEKLTLGVTILL 302
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.8 bits (49), Expect = 5.0
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 598 IMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAE 636
+M +L + +T+GYMA + + N I E+++ E
Sbjct: 292 VMVFASLLEYATVGYMAKRIQMRKNRFQKIAESMKTARE 330
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.8 bits (49), Expect = 5.0
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 598 IMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAE 636
+M +L + +T+GYMA + + N I E+++ E
Sbjct: 292 VMVFASLLEYATVGYMAKRIQMRKNRFQKIAESMKTARE 330
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 23.8 bits (49), Expect = 5.0
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 598 IMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAE 636
+M +L + +T+GYMA + + N I E+++ E
Sbjct: 231 VMVFASLLEYATVGYMAKRIQMRKNRFQKIAESMKTARE 269
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 23.0 bits (47), Expect = 8.7
Identities = 38/153 (24%), Positives = 63/153 (41%), Gaps = 13/153 (8%)
Query: 382 NISREMLQQNKILKVIRKNLVKKCLELFEELAE-DKENYKKYYEQFSKNLKLGIHEDSQN 440
NIS E+L++ KI++ + L+ + ++ ++ E D K F NL + E
Sbjct: 434 NISEEVLKEAKIIQEEIRTLLDESIQRKSDITELDVSKRCKDLASFMGNL---LQETRTP 490
Query: 441 RAKLSELLRYHTSASGDEACSLKEYVSRM--KENQKHIYY------ITGENRDQVANSSF 492
L S SG L+E+ S M + + H YY T + +Q+ +
Sbjct: 491 GFGKDVLATDERSFSGSRNPLLQEHDSVMLGEISPHHEYYDSKSSTETPPSYNQLNYNEN 550
Query: 493 VERVKKRGYEVVYMTEPIDEYVVQQMREYDGKT 525
+ER K V M DE ++ + GKT
Sbjct: 551 IERFFKSKPPVATMYGS-DEEIINSSNDEGGKT 582
>AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein.
Length = 238
Score = 23.0 bits (47), Expect = 8.7
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 382 NISREMLQQNKILKVIRKNLVKKCLELFEELAE-DKENYKKYYEQFSKNL 430
NIS E+L++ KI++ + L+ + ++ ++ E D K F +NL
Sbjct: 140 NISEEVLKEAKIIQEEIRTLLDESIQRKSDITELDVSKRCKDLASFMENL 189
Database: bee
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 140,377
Number of sequences in database: 429
Lambda K H
0.316 0.134 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,864
Number of Sequences: 429
Number of extensions: 6849
Number of successful extensions: 23
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 16
length of query: 716
length of database: 140,377
effective HSP length: 63
effective length of query: 653
effective length of database: 113,350
effective search space: 74017550
effective search space used: 74017550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)
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