GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004608-TA|BGIBMGA004608-PA|IPR001715|Calponin-like
actin-binding, IPR001589|Actin-binding, actinin-type
         (640 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    25   2.5  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   7.7  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 499 ADGKVVIDLIDAIKPGSINYDLVL 522
           ADGK +I+ +DAI P S   D  L
Sbjct: 223 ADGKTLIEALDAILPPSRPTDKAL 246


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 361 VAPHVNWLYSDL--TDGLVIFQLYDIIKPG 388
           +AP+ NW Y+D+   DGL       + K G
Sbjct: 103 IAPYPNWSYNDVKYCDGLTSVYRMQVDKCG 132


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,651
Number of Sequences: 429
Number of extensions: 7211
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 2
length of query: 640
length of database: 140,377
effective HSP length: 62
effective length of query: 578
effective length of database: 113,779
effective search space: 65764262
effective search space used: 65764262
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)