GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004604-TA|BGIBMGA004604-PA|IPR000169|Peptidase, cysteine
peptidase active site
         (203 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    25   0.50 
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    25   0.50 

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6
          variant 2 precursor protein.
          Length = 94

 Score = 25.0 bits (52), Expect = 0.50
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 3  CTDLCVCETTLQVSCKVACVPRAPC 27
          C   CVC      + K  CVPR+ C
Sbjct: 67 CAPGCVCRLGYLRNKKKVCVPRSKC 91


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6
          variant 1 precursor protein.
          Length = 92

 Score = 25.0 bits (52), Expect = 0.50
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 3  CTDLCVCETTLQVSCKVACVPRAPC 27
          C   CVC      + K  CVPR+ C
Sbjct: 67 CAPGCVCRLGYLRNKKKVCVPRSKC 91


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,210
Number of Sequences: 429
Number of extensions: 2759
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 203
length of database: 140,377
effective HSP length: 55
effective length of query: 148
effective length of database: 116,782
effective search space: 17283736
effective search space used: 17283736
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)