GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004601-TA|BGIBMGA004601-PA|IPR001356|Homeobox,
IPR009057|Homeodomain-like
         (525 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    68   2e-13
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    56   1e-09
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    54   2e-09
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    54   2e-09
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    54   2e-09
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    54   3e-09
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    53   5e-09
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    52   2e-08
AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.        46   1e-06
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              26   0.88 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   4.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.7  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 67.7 bits (158), Expect = 2e-13
 Identities = 31/62 (50%), Positives = 42/62 (67%)

Query: 94  KRKQRRYRTTFSNIQLEQLESAFQKTHYPDVFFREELAMRIDLTEARVQVWFQNRRAKWR 153
           +R+ RR RT F+  QL  LE+ F+ T Y  V  R  LA+ + LTE +V++WFQNRR KW+
Sbjct: 5   RREARRARTAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWK 64

Query: 154 KQ 155
           KQ
Sbjct: 65  KQ 66


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 55.6 bits (128), Expect = 1e-09
 Identities = 25/63 (39%), Positives = 39/63 (61%)

Query: 96  KQRRYRTTFSNIQLEQLESAFQKTHYPDVFFREELAMRIDLTEARVQVWFQNRRAKWRKQ 155
           +++R R T++  Q  +LE  F    Y     R E+A  + LTE ++++WFQNRR KW+K+
Sbjct: 269 ERKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 328

Query: 156 QKS 158
            KS
Sbjct: 329 NKS 331


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 54.4 bits (125), Expect = 2e-09
 Identities = 25/64 (39%), Positives = 40/64 (62%)

Query: 95  RKQRRYRTTFSNIQLEQLESAFQKTHYPDVFFREELAMRIDLTEARVQVWFQNRRAKWRK 154
           +  R+ RT F+  QL  LE  F++  Y  +  R E +  + LTE +V++WFQNRRAK ++
Sbjct: 7   KPNRKPRTPFTTQQLLSLEKKFREKQYLTIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 66

Query: 155 QQKS 158
            Q++
Sbjct: 67  LQEA 70


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 54.4 bits (125), Expect = 2e-09
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 83  KSSSGSKGDVPKRKQRRYRTTFSNIQLEQLESAFQKTHYPDVFFREELAMRIDLTEARVQ 142
           K S   K   P+ K  R RT FS  QL +L+  F +  Y     R++L+  + LTEA+++
Sbjct: 8   KRSHNGKNGSPEEK--RPRTAFSAEQLARLKREFAENRYLTERRRQQLSRDLGLTEAQIK 65

Query: 143 VWFQNRRAKWRK 154
           +WFQN+RAK +K
Sbjct: 66  IWFQNKRAKIKK 77


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 54.4 bits (125), Expect = 2e-09
 Identities = 24/60 (40%), Positives = 37/60 (61%)

Query: 98  RRYRTTFSNIQLEQLESAFQKTHYPDVFFREELAMRIDLTEARVQVWFQNRRAKWRKQQK 157
           +R RT+++  Q  +LE  F    Y     R E+A  + LTE ++++WFQNRR KW+K+ K
Sbjct: 9   KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 68


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 54.0 bits (124), Expect = 3e-09
 Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 92  VPKRKQRRYRTTFSNIQLEQLESAFQKTHYPDVFFREELAMRIDLTEARVQVWFQNRRAK 151
           VP+RK  R R T++  Q  +LE  F    Y     R E+A  + LTE ++++WFQNRR K
Sbjct: 5   VPERK--RGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 62

Query: 152 WRKQ 155
           W+K+
Sbjct: 63  WKKE 66


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 53.2 bits (122), Expect = 5e-09
 Identities = 25/69 (36%), Positives = 43/69 (62%)

Query: 86  SGSKGDVPKRKQRRYRTTFSNIQLEQLESAFQKTHYPDVFFREELAMRIDLTEARVQVWF 145
           S  +G+    +++R RT FS  QL +L+  F +  Y     R++L+  + L EA++++WF
Sbjct: 9   SDGRGNGGTPEEKRPRTAFSGEQLARLKREFAENRYLTERRRQQLSRDLGLNEAQIKIWF 68

Query: 146 QNRRAKWRK 154
           QN+RAK +K
Sbjct: 69  QNKRAKIKK 77


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 51.6 bits (118), Expect = 2e-08
 Identities = 24/62 (38%), Positives = 38/62 (61%)

Query: 97  QRRYRTTFSNIQLEQLESAFQKTHYPDVFFREELAMRIDLTEARVQVWFQNRRAKWRKQQ 156
           +RR R T++  Q  +LE  F   HY     R E+A  + LTE ++++WFQNRR K +K+ 
Sbjct: 8   RRRGRQTYTRFQTLELEKEFHYNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 67

Query: 157 KS 158
           ++
Sbjct: 68  RA 69


>AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.
          Length = 43

 Score = 45.6 bits (103), Expect = 1e-06
 Identities = 19/42 (45%), Positives = 30/42 (71%)

Query: 117 QKTHYPDVFFREELAMRIDLTEARVQVWFQNRRAKWRKQQKS 158
           Q+T Y  +  R ELA  + LT+ +V++WFQNRR+K++K  K+
Sbjct: 1   QRTQYLALPERAELAASLGLTQTQVKIWFQNRRSKYKKMMKA 42


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 25.8 bits (54), Expect = 0.88
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 285 KYEVKDETNRVNFNEMNTQDIETDLLKETANE 316
           K+ V DE    NFNE NT+DI   +L +   +
Sbjct: 69  KFNVVDENG--NFNEKNTRDIVQAVLDDNETD 98


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 248 IEETNVTQWDSRMIPTFNLMNLKPLME-TREDVNIHEMKYEVKDETNRVNFNEMNT 302
           ++ +N+T+++    P  +  N + L + T   +N HE K  V  E+N   F  M T
Sbjct: 418 VQISNMTEYNGLTEPKKD--NKRKLSDSTMNKINNHEYKRSVSRESNSNQFILMTT 471


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)

Query: 82   PKSSSGSKGDVPKR-KQRRY 100
            PK ++G KG  PKR K R Y
Sbjct: 1024 PKPATGGKGTRPKRGKYRNY 1043


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,975
Number of Sequences: 429
Number of extensions: 7122
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 12
length of query: 525
length of database: 140,377
effective HSP length: 61
effective length of query: 464
effective length of database: 114,208
effective search space: 52992512
effective search space used: 52992512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)