GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004597-TA|BGIBMGA004597-PA|undefined
         (202 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   6.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.1  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/18 (44%), Positives = 14/18 (77%)

Query: 98  IEKISRDLNIEIHEIPES 115
           I+K ++D+N+EI   P+S
Sbjct: 461 IDKETKDMNLEISTRPKS 478


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic
          acetylcholine receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 44 HFKNELTATTDFITAEQRDFKLAIEDKE 71
          + KN++  T  ++     D+KL  E KE
Sbjct: 69 NLKNQIMTTNLWVEQSWYDYKLRWEPKE 96


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic
          acetylcholine receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 44 HFKNELTATTDFITAEQRDFKLAIEDKE 71
          + KN++  T  ++     D+KL  E KE
Sbjct: 69 NLKNQIMTTNLWVEQSWYDYKLRWEPKE 96


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 107 IEIHEIPESRNENVLDLFKRLC 128
           I+  E P S   N   L K+LC
Sbjct: 581 IDAIEFPRSITRNATALIKKLC 602


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.131    0.345 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,537
Number of Sequences: 429
Number of extensions: 1767
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 202
length of database: 140,377
effective HSP length: 55
effective length of query: 147
effective length of database: 116,782
effective search space: 17166954
effective search space used: 17166954
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)