GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004595-TA|BGIBMGA004595-PA|IPR001312|Hexokinase
         (431 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   5.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   6.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 8/25 (32%), Positives = 16/25 (64%)

Query: 185  IDRNVGIGVILGTGSNGCYMERASR 209
            + R+V  G+  G+G+NG +++   R
Sbjct: 1265 VPRDVSEGIYDGSGANGSFLDNLIR 1289


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 6/28 (21%), Positives = 13/28 (46%)

Query: 202 CYMERASRVLHWERPHSAVHDVCIDIEW 229
           C++ R    + WE       ++ +D +W
Sbjct: 380 CFLTRGDLWISWEEGMKVFDELLLDADW 407


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.137    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,413
Number of Sequences: 429
Number of extensions: 4123
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 3
length of query: 431
length of database: 140,377
effective HSP length: 60
effective length of query: 371
effective length of database: 114,637
effective search space: 42530327
effective search space used: 42530327
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)