Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA004594-TA|BGIBMGA004594-PA|IPR012934|Zinc finger,
AD-type, IPR007087|Zinc finger, C2H2-type
(490 letters)
Database: bee
429 sequences; 140,377 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 170 3e-44
L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein pro... 85 2e-18
L01589-1|AAA27736.1| 81|Apis mellifera zinc finger protein pro... 66 5e-13
L01587-1|AAA27734.1| 69|Apis mellifera zinc finger protein pro... 48 2e-07
AB208106-1|BAE72138.1| 111|Apis mellifera Broad complex zinc fi... 35 0.001
AB208107-1|BAE72139.1| 71|Apis mellifera Broad complex zinc fi... 33 0.005
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 33 0.005
AB208108-1|BAE72140.1| 92|Apis mellifera Broad complex zinc fi... 31 0.022
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 24 3.3
AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. 24 3.3
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 170 bits (413), Expect = 3e-44
Identities = 83/240 (34%), Positives = 118/240 (49%), Gaps = 18/240 (7%)
Query: 248 DQNPLKCTRCRKSV-KKDTWAEHWQNHWKRDHRPYRCALCDKSFTSSQQVMVHGLSHSHN 306
++ +C C+K+ +K+ + H ++H K PYRC +C K+F ++ H +H+
Sbjct: 58 EEKTYQCLLCQKAFDQKNLYQSHLRSHGKEGEDPYRCNICGKTFAVPARLTRHYRTHTG- 116
Query: 307 PVDDEAMQLKKQNRYVCDFCPEEFMYMRCLQAHRTNAHPESASKAVTHRCWKCSRQFAHL 366
+ Y C++C + F L HR H +K ++C C R F H
Sbjct: 117 -----------EKPYQCEYCSKSFSVKENLSVHR-RIH----TKERPYKCDVCERAFEHS 160
Query: 367 NSLRRHFMTHTGERNFLCNVCGKAMSSRDHLKLHINIHTGYKPNVCSTCGKGFVKKSNLK 426
L RH HTGER C VC K L +H+ HTG KP VC CGKGF LK
Sbjct: 161 GKLHRHMRIHTGERPHKCTVCSKTFIQSGQLVIHMRTHTGEKPYVCKACGKGFTCSKQLK 220
Query: 427 LHERVHSGEKPYVCSHCGKAFSQRSTLVIHERYHNGVRPYVCALCGRGFVAKGLLSVHLK 486
+H R H+GEKPY C CGK+F L +H+ H G + Y C LC F +K + +H+K
Sbjct: 221 VHTRTHTGEKPYTCDICGKSFGYNHVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHIK 280
Score = 142 bits (344), Expect = 6e-36
Identities = 82/262 (31%), Positives = 121/262 (46%), Gaps = 34/262 (12%)
Query: 202 LPNLKDK-YRCCICLKNCKFKSTLLKHYKTHGKDIPKTNNLQVPPIPDQNPLKCTRCRKS 260
L N+++K Y+C +C K K+ H ++HGK+ ++P +C C K+
Sbjct: 54 LTNIEEKTYQCLLCQKAFDQKNLYQSHLRSHGKE-------------GEDPYRCNICGKT 100
Query: 261 VKKDT-WAEHWQNHWKRDHRPYRCALCDKSFTSSQQVMVHGLSHSHNPVDDEAMQLKKQN 319
H++ H +PY+C C KSF+ + + VH H+ K+
Sbjct: 101 FAVPARLTRHYRTH--TGEKPYQCEYCSKSFSVKENLSVHRRIHT------------KER 146
Query: 320 RYVCDFCPEEFMYMRCLQAHRTNAHPESASKAVTHRCWKCSRQFAHLNSLRRHFMTHTGE 379
Y CD C F + L HR H + H+C CS+ F L H THTGE
Sbjct: 147 PYKCDVCERAFEHSGKL--HR---HMRIHTGERPHKCTVCSKTFIQSGQLVIHMRTHTGE 201
Query: 380 RNFLCNVCGKAMSSRDHLKLHINIHTGYKPNVCSTCGKGFVKKSNLKLHERVHSGEKPYV 439
+ ++C CGK + LK+H HTG KP C CGK F LKLH+ H GEK Y
Sbjct: 202 KPYVCKACGKGFTCSKQLKVHTRTHTGEKPYTCDICGKSFGYNHVLKLHQVAHYGEKVYK 261
Query: 440 CSHCGKAFSQRSTLVIHERYHN 461
C+ C + F + T+ +H + H+
Sbjct: 262 CTLCHETFGSKKTMELHIKTHS 283
Score = 32.3 bits (70), Expect = 0.009
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 16/114 (14%)
Query: 209 YRCCICLKNCKFKSTLLKHYKTH-----------GKDIPKTNNLQVPPIPD--QNPLKCT 255
++C +C K L+ H +TH GK + L+V + P C
Sbjct: 176 HKCTVCSKTFIQSGQLVIHMRTHTGEKPYVCKACGKGFTCSKQLKVHTRTHTGEKPYTCD 235
Query: 256 RCRKSVKKDTWAE-HWQNHWKRDHRPYRCALCDKSFTSSQQVMVHGLSHSHNPV 308
C KS + + H H+ + Y+C LC ++F S + + +H +HS + V
Sbjct: 236 ICGKSFGYNHVLKLHQVAHY--GEKVYKCTLCHETFGSKKTMELHIKTHSDSSV 287
Score = 24.2 bits (50), Expect = 2.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 464 RPYVCALCGRGFVAKGLLSVHLKN 487
+ Y C LC + F K L HL++
Sbjct: 60 KTYQCLLCQKAFDQKNLYQSHLRS 83
>L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein
protein.
Length = 74
Score = 84.6 bits (200), Expect = 2e-18
Identities = 35/69 (50%), Positives = 45/69 (65%)
Query: 375 THTGERNFLCNVCGKAMSSRDHLKLHINIHTGYKPNVCSTCGKGFVKKSNLKLHERVHSG 434
THTGE+ F C C K + HLK H+ +HTG KP CS C + FV+ +NL+ H RVH+G
Sbjct: 3 THTGEKPFECPECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTG 62
Query: 435 EKPYVCSHC 443
E+PY C C
Sbjct: 63 ERPYACELC 71
Score = 84.6 bits (200), Expect = 2e-18
Identities = 36/68 (52%), Positives = 42/68 (61%)
Query: 404 HTGYKPNVCSTCGKGFVKKSNLKLHERVHSGEKPYVCSHCGKAFSQRSTLVIHERYHNGV 463
HTG KP C C K F + +LK H R+H+GEKPY CSHC + F Q + L H R H G
Sbjct: 4 HTGEKPFECPECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTGE 63
Query: 464 RPYVCALC 471
RPY C LC
Sbjct: 64 RPYACELC 71
Score = 59.3 bits (137), Expect = 7e-11
Identities = 26/58 (44%), Positives = 33/58 (56%)
Query: 429 ERVHSGEKPYVCSHCGKAFSQRSTLVIHERYHNGVRPYVCALCGRGFVAKGLLSVHLK 486
ER H+GEKP+ C C K F++ L H R H G +PY C+ C R FV L HL+
Sbjct: 1 ERTHTGEKPFECPECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLR 58
Score = 53.2 bits (122), Expect = 5e-09
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 356 CWKCSRQFAHLNSLRRHFMTHTGERNFLCNVCGKAMSSRDHLKLHINIHTGYKPNVCSTC 415
C +C ++F + L+ H HTGE+ + C+ C + +L+ H+ +HTG +P C C
Sbjct: 12 CPECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTGERPYACELC 71
Score = 50.0 bits (114), Expect = 4e-08
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 326 CPEEFMYMRCLQAHRTNAHPESASKAVTHRCWKCSRQFAHLNSLRRHFMTHTGERNFLCN 385
CPE + R + H H + + C C RQF + +LRRH HTGER + C
Sbjct: 12 CPE--CHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTGERPYACE 69
Query: 386 VC 387
+C
Sbjct: 70 LC 71
Score = 33.1 bits (72), Expect = 0.005
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 249 QNPLKCTRCRKSVKKDTWAEHWQNHWK--RDHRPYRCALCDKSFTSSQQVMVHGLSHS 304
+ P +C C K +D H + H + +PY C+ CD+ F + H H+
Sbjct: 7 EKPFECPECHKRFTRD---HHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHT 61
Score = 24.6 bits (51), Expect = 1.9
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 12/61 (19%)
Query: 279 RPYRCALCDKSFTSSQQVMVHGLSHSHNPVDDEAMQLKKQNRYVCDFCPEEFMYMRCLQA 338
+P+ C C K FT + H H+ + Y C C +F+ + L+
Sbjct: 8 KPFECPECHKRFTRDHHLKTHMRLHT------------GEKPYHCSHCDRQFVQVANLRR 55
Query: 339 H 339
H
Sbjct: 56 H 56
>L01589-1|AAA27736.1| 81|Apis mellifera zinc finger protein
protein.
Length = 81
Score = 66.5 bits (155), Expect = 5e-13
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 379 ERNFLCNVCGKAMSSRDHLKLHINIHTGYKPNVCSTCGKGFVKKSNLKLHERVHSGEKPY 438
+++F C C K S LK+HI HT P C CGK F + L+ H R H+GEKP+
Sbjct: 14 KKSFSCKYCEKVYVSLGALKMHIRTHT--LPCKCHLCGKAFSRPWLLQGHIRTHTGEKPF 71
Query: 439 VCSHCGKAFS 448
C HC +AF+
Sbjct: 72 SCQHCNRAFA 81
Score = 54.0 bits (124), Expect = 3e-09
Identities = 27/64 (42%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 412 CSTCGKGFVKKSNLKLHERVHSGEKPYVCSHCGKAFSQRSTLVIHERYHNGVRPYVCALC 471
C C K +V LK+H R H+ P C CGKAFS+ L H R H G +P+ C C
Sbjct: 19 CKYCEKVYVSLGALKMHIRTHT--LPCKCHLCGKAFSRPWLLQGHIRTHTGEKPFSCQHC 76
Query: 472 GRGF 475
R F
Sbjct: 77 NRAF 80
Score = 40.7 bits (91), Expect = 3e-05
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 305 HNPVDDEAMQLKKQNRYVCDFCPEEFMYMRCLQAH-RTNAHPESASKAVTHRCWKCSRQF 363
H A + + + + C +C + ++ + L+ H RT+ P +C C + F
Sbjct: 1 HQQFHCAAAEGQAKKSFSCKYCEKVYVSLGALKMHIRTHTLP--------CKCHLCGKAF 52
Query: 364 AHLNSLRRHFMTHTGERNFLCNVCGKAMS 392
+ L+ H THTGE+ F C C +A +
Sbjct: 53 SRPWLLQGHIRTHTGEKPFSCQHCNRAFA 81
Score = 36.3 bits (80), Expect = 6e-04
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 435 EKPYVCSHCGKAFSQRSTLVIHERYHNGVRPYVCALCGRGFVAKGLLSVHLK 486
+K + C +C K + L +H R H P C LCG+ F LL H++
Sbjct: 14 KKSFSCKYCEKVYVSLGALKMHIRTHT--LPCKCHLCGKAFSRPWLLQGHIR 63
>L01587-1|AAA27734.1| 69|Apis mellifera zinc finger protein
protein.
Length = 69
Score = 47.6 bits (108), Expect = 2e-07
Identities = 23/68 (33%), Positives = 33/68 (48%)
Query: 394 RDHLKLHINIHTGYKPNVCSTCGKGFVKKSNLKLHERVHSGEKPYVCSHCGKAFSQRSTL 453
+ HL+ H+ H G KP C C V KS L H + HS Y C++C A +L
Sbjct: 1 KHHLEYHLRNHFGSKPFKCEKCSYSCVNKSMLNSHLKSHSNVYQYRCANCTYATKYCHSL 60
Query: 454 VIHERYHN 461
+H R ++
Sbjct: 61 KLHLRKYS 68
Score = 43.2 bits (97), Expect = 5e-06
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 422 KSNLKLHERVHSGEKPYVCSHCGKAFSQRSTLVIHERYHNGVRPYVCALCGRGFVAKGLL 481
K +L+ H R H G KP+ C C + +S L H + H+ V Y CA C L
Sbjct: 1 KHHLEYHLRNHFGSKPFKCEKCSYSCVNKSMLNSHLKSHSNVYQYRCANCTYATKYCHSL 60
Query: 482 SVHLK 486
+HL+
Sbjct: 61 KLHLR 65
Score = 36.7 bits (81), Expect = 4e-04
Identities = 18/65 (27%), Positives = 27/65 (41%)
Query: 369 LRRHFMTHTGERNFLCNVCGKAMSSRDHLKLHINIHTGYKPNVCSTCGKGFVKKSNLKLH 428
L H H G + F C C + ++ L H+ H+ C+ C +LKLH
Sbjct: 4 LEYHLRNHFGSKPFKCEKCSYSCVNKSMLNSHLKSHSNVYQYRCANCTYATKYCHSLKLH 63
Query: 429 ERVHS 433
R +S
Sbjct: 64 LRKYS 68
Score = 31.9 bits (69), Expect = 0.012
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 453 LVIHERYHNGVRPYVCALCGRGFVAKGLLSVHLKN 487
L H R H G +P+ C C V K +L+ HLK+
Sbjct: 4 LEYHLRNHFGSKPFKCEKCSYSCVNKSMLNSHLKS 38
Score = 31.5 bits (68), Expect = 0.016
Identities = 16/63 (25%), Positives = 25/63 (39%)
Query: 339 HRTNAHPESASKAVTHRCWKCSRQFAHLNSLRRHFMTHTGERNFLCNVCGKAMSSRDHLK 398
H H + + +C KCS + + L H +H+ + C C A LK
Sbjct: 2 HHLEYHLRNHFGSKPFKCEKCSYSCVNKSMLNSHLKSHSNVYQYRCANCTYATKYCHSLK 61
Query: 399 LHI 401
LH+
Sbjct: 62 LHL 64
Score = 27.9 bits (59), Expect = 0.20
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 335 CLQAHRTNAHPESASKAVTHRCWKCSRQFAHLNSLRRHFMTHT 377
C+ N+H +S S +RC C+ + +SL+ H ++
Sbjct: 26 CVNKSMLNSHLKSHSNVYQYRCANCTYATKYCHSLKLHLRKYS 68
Score = 25.4 bits (53), Expect = 1.1
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 269 HWQNHWKRDHRPYRCALCDKSFTSSQQVMVHGLSHSH 305
H +NH+ +P++C C S + + H SHS+
Sbjct: 7 HLRNHF--GSKPFKCEKCSYSCVNKSMLNSHLKSHSN 41
Score = 23.0 bits (47), Expect = 5.8
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 209 YRCCICLKNCKFKSTLLKHYKTH 231
++C C +C KS L H K+H
Sbjct: 17 FKCEKCSYSCVNKSMLNSHLKSH 39
>AB208106-1|BAE72138.1| 111|Apis mellifera Broad complex zinc
finger domain-Z1 isoform protein.
Length = 111
Score = 35.1 bits (77), Expect = 0.001
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 382 FLCNVCGKAMSSRDHLKLHI-NIHT-GYKPNVCSTCGKGFVKKSNLKLHERVH 432
F C C K ++S L+ HI N+HT K +C+ C + + ++L+ H+ ++
Sbjct: 3 FRCEPCNKILTSLTRLRRHIQNVHTRPSKEPICNICKRVYSSLNSLRNHKSIY 55
Score = 30.3 bits (65), Expect = 0.038
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 319 NRYVCDFCPEEFMYMRCLQAHRTNAHPESASKAVTHRCWKCSRQFAHLNSLRRH 372
+ + C+ C + + L+ H N H + + + C C R ++ LNSLR H
Sbjct: 1 DEFRCEPCNKILTSLTRLRRHIQNVHTRPSKEPI---CNICKRVYSSLNSLRNH 51
>AB208107-1|BAE72139.1| 71|Apis mellifera Broad complex zinc
finger domain-Z2 isoform protein.
Length = 71
Score = 33.1 bits (72), Expect = 0.005
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 433 SGEKPYVCSHCGKAFSQRSTLVIH--ERYHNGVRPYVCALCGRGFVAKGLLSVHL 485
S +K + C CGK +++L H +++ Y C +C R + ++ L H+
Sbjct: 1 SAKKLFTCQLCGKVLCSKASLKRHVADKHAERQEEYRCVICERVYCSRNSLMTHI 55
Score = 31.5 bits (68), Expect = 0.016
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 377 TGERNFLCNVCGKAMSSRDHLKLHI-NIHTGYKPNV-CSTCGKGFVKKSNLKLHERVHSG 434
+ ++ F C +CGK + S+ LK H+ + H + C C + + +++L H +
Sbjct: 1 SAKKLFTCQLCGKVLCSKASLKRHVADKHAERQEEYRCVICERVYCSRNSLMTHIYTYHK 60
Query: 435 EKP 437
+P
Sbjct: 61 SRP 63
Score = 30.7 bits (66), Expect = 0.029
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 321 YVCDFCPEEFMYMRCLQAHRTNAHPESASKAVTHRCWKCSRQFAHLNSLRRHFMTHTGER 380
+ C C + L+ H + H E + +RC C R + NSL H T+ R
Sbjct: 6 FTCQLCGKVLCSKASLKRHVADKHAERQEE---YRCVICERVYCSRNSLMTHIYTYHKSR 62
Score = 28.3 bits (60), Expect = 0.15
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 254 CTRCRKSV-KKDTWAEHWQNHWKRDHRPYRCALCDKSFTSSQQVMVHGLS-HSHNPVD 309
C C K + K + H + YRC +C++ + S +M H + H P D
Sbjct: 8 CQLCGKVLCSKASLKRHVADKHAERQEEYRCVICERVYCSRNSLMTHIYTYHKSRPGD 65
Score = 25.8 bits (54), Expect = 0.82
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 206 KDKYRCCICLKNCKFKSTLLKHYKTHGKDIP 236
+++YRC IC + +++L+ H T+ K P
Sbjct: 33 QEEYRCVICERVYCSRNSLMTHIYTYHKSRP 63
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 33.1 bits (72), Expect = 0.005
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 321 YVCDFCPEEFMYMRCLQAHRTNAHPESASKAVTHRCWKCSRQFAHLNSLRRH 372
Y CD C + L+ H+ H + + AV C C + F LNSL H
Sbjct: 372 YTCDVCGKTLSTKLTLKRHKEQQHFQPLNSAV---CALCHKVFRTLNSLNNH 420
Score = 32.7 bits (71), Expect = 0.007
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 438 YVCSHCGKAFSQRSTLVIH--ERYHNGVRPYVCALCGRGFVAKGLLSVH 484
Y C CGK S + TL H +++ + VCALC + F L+ H
Sbjct: 372 YTCDVCGKTLSTKLTLKRHKEQQHFQPLNSAVCALCHKVFRTLNSLNNH 420
Score = 31.9 bits (69), Expect = 0.012
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 382 FLCNVCGKAMSSRDHLKLHINIHTGYKP---NVCSTCGKGFVKKSNLKLHERVH 432
+ C+VCGK +S++ LK H ++P VC+ C K F ++L H+ ++
Sbjct: 372 YTCDVCGKTLSTKLTLKRH-KEQQHFQPLNSAVCALCHKVFRTLNSLNNHKSIY 424
>AB208108-1|BAE72140.1| 92|Apis mellifera Broad complex zinc
finger domain-Z3 isoform protein.
Length = 92
Score = 31.1 bits (67), Expect = 0.022
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 408 KPNVCSTCGKGFVKKSNLKLH--ERVHSGEKPYVCSHCGKAFSQRSTLVIHER-YHNG 462
+P C C + F +LK H ++ + YVC C + + +++L H+ H G
Sbjct: 4 EPQECPYCRRNFSCYYSLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTHKSLQHRG 61
Score = 30.7 bits (66), Expect = 0.029
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 436 KPYVCSHCGKAFSQRSTLVIH--ERYHNGVRPYVCALCGRGFVAKGLLSVH 484
+P C +C + FS +L H +++ YVC C R + K L+ H
Sbjct: 4 EPQECPYCRRNFSCYYSLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTH 54
Score = 29.9 bits (64), Expect = 0.050
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 356 CWKCSRQFAHLNSLRRHFMT--HTGERNFLCNVCGKAMSSRDHLKLHINI-HTG 406
C C R F+ SL+RHF + ++C C + +++ L H ++ H G
Sbjct: 8 CPYCRRNFSCYYSLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTHKSLQHRG 61
Score = 25.8 bits (54), Expect = 0.82
Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 10/71 (14%)
Query: 278 HRPYRCALCDKSFTSSQQVMVHGLSHSHNPVDDEAMQLKKQNRYVCDFCPEEFMYMRCLQ 337
+ P C C ++F+ + H H D YVC+FC + L
Sbjct: 3 NEPQECPYCRRNFSCYYSLKRH-FQDKHEQSD---------TLYVCEFCNRRYRTKNSLT 52
Query: 338 AHRTNAHPESA 348
H++ H S+
Sbjct: 53 THKSLQHRGSS 63
Score = 25.8 bits (54), Expect = 0.82
Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 251 PLKCTRCRKSVK-KDTWAEHWQNHWKRDHRPYRCALCDKSFTSSQQVMVH-GLSH 303
P +C CR++ + H+Q+ ++ Y C C++ + + + H L H
Sbjct: 5 PQECPYCRRNFSCYYSLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTHKSLQH 59
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 23.8 bits (49), Expect = 3.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 200 DDLPNLKDKYRCCICLKNCKFKS 222
+DLP +KD Y I L+ F+S
Sbjct: 350 EDLPFIKDIYETVIKLEGASFRS 372
>AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein.
Length = 238
Score = 23.8 bits (49), Expect = 3.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 200 DDLPNLKDKYRCCICLKNCKFKS 222
+DLP +KD Y I L+ F+S
Sbjct: 56 EDLPFIKDIYETVIKLEGASFRS 78
Database: bee
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 140,377
Number of sequences in database: 429
Lambda K H
0.319 0.134 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,807
Number of Sequences: 429
Number of extensions: 7377
Number of successful extensions: 90
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 42
length of query: 490
length of database: 140,377
effective HSP length: 60
effective length of query: 430
effective length of database: 114,637
effective search space: 49293910
effective search space used: 49293910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)
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