GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004592-TA|BGIBMGA004592-PA|IPR002126|Cadherin,
IPR008985|Concanavalin A-like lectin/glucanase
         (899 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    29   0.17 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       25   3.6  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    24   4.8  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 29.1 bits (62), Expect = 0.17
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 104 ATDKDCTPRYGDVCKYEILTDRSQPFTINVEGVIRNTEPLDYEKSH 149
           A  KDC+   G V  Y+I  D+     I   G+I NT+P+   K H
Sbjct: 117 ANYKDCS---GIVSAYKIAIDKFDRLWILDSGIINNTQPMCSPKLH 159


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 142 PLDYEKSHNHILSVVAYDCGMMQSTPVMVTIKVNKPCR 179
           P+D   +  HI+S+V Y   M+ S     T+ +   CR
Sbjct: 28  PIDMRFNEGHIVSIVFYSVLMIISAIGNTTVLILITCR 65


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 96  YDEILRVEATDKDCTPRYGDVCKYEIL 122
           Y ++ ++    KD   RYG +CK E L
Sbjct: 73  YYKLNKIHDAYKDLNQRYGALCKEEAL 99


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,906
Number of Sequences: 429
Number of extensions: 10505
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 3
length of query: 899
length of database: 140,377
effective HSP length: 64
effective length of query: 835
effective length of database: 112,921
effective search space: 94289035
effective search space used: 94289035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)