GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004591-TA|BGIBMGA004591-PA|undefined
         (151 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0245 + 15995689-15995742,15995979-15996075,15996165-159961...    28   2.8  
03_06_0255 + 32689481-32689673,32689772-32689986                       28   3.7  
12_02_0674 - 21745321-21746223,21746229-21747608                       27   6.4  

>09_04_0245 +
           15995689-15995742,15995979-15996075,15996165-15996185,
           15996442-15996573,15996707-15996834,15996919-15997203,
           15997391-15997521,15999700-15999817,16000609-16000703,
           16001437-16001511,16001860-16001911,16002767-16002859,
           16003625-16003690,16003785-16003867,16003942-16004054,
           16005271-16005410,16005569-16005643,16006084-16006160,
           16006426-16006514,16008039-16008085,16009004-16009138,
           16009298-16009345,16009605-16009667,16009709-16009730,
           16010284-16010458,16014250-16014321,16014887-16014958,
           16015904-16016005,16016197-16016225,16016333-16016403,
           16016549-16016597,16016684-16016784,16017495-16017623,
           16017683-16017752,16017975-16018194,16019368-16019389,
           16019457-16019604,16021569-16021693,16022344-16022774,
           16022984-16023110,16023241-16023292,16023351-16023502
          Length = 1461

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 7   EPDEGYHGLIKENETLVEVTPPIRARGPLCSFLILNNIHHGEAPFEDEQALGRCTLGVGN 66
           + D     LIK+  TL    P +   GPL  + + NN   G+ P      +   +L   N
Sbjct: 776 QEDSIVFALIKQQPTLP--LPKLPVAGPLRKWNLANNNLEGQIPDNISSCINLISLNFSN 833

Query: 67  NLLV 70
           N LV
Sbjct: 834 NNLV 837


>03_06_0255 + 32689481-32689673,32689772-32689986
          Length = 135

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 98  AAAEYTTREQGGVDHGLFYSSWPRGLRYVYVAVIEVE 134
           +A  Y   +  G D+G+ Y +W  G R+     ++VE
Sbjct: 31  SATAYRVGDDSGWDNGVDYDAWAHGKRFKVGDTLDVE 67


>12_02_0674 - 21745321-21746223,21746229-21747608
          Length = 760

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 18/53 (33%), Positives = 25/53 (47%)

Query: 30  RARGPLCSFLILNNIHHGEAPFEDEQALGRCTLGVGNNLLVRGEKEEIVAHGE 82
           R +G L   L+LNN   G  P E  +      + VG N+LV    EE+   G+
Sbjct: 263 RMKGTLNELLLLNNRLDGCIPPEIGELADAEVVDVGGNMLVGLLPEELAKMGK 315


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.140    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,728,835
Number of Sequences: 37544
Number of extensions: 184592
Number of successful extensions: 247
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 245
Number of HSP's gapped (non-prelim): 3
length of query: 151
length of database: 14,793,348
effective HSP length: 76
effective length of query: 75
effective length of database: 11,940,004
effective search space: 895500300
effective search space used: 895500300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)