GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004591-TA|BGIBMGA004591-PA|undefined
         (151 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81458-2|CAB03822.1|  386|Caenorhabditis elegans Hypothetical pr...    31   0.27 
Z70038-8|CAA93887.2|  618|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z68319-7|CAA92704.2|  618|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AY220985-1|AAO65265.1|  618|Caenorhabditis elegans putative RNA ...    28   3.3  

>Z81458-2|CAB03822.1|  386|Caenorhabditis elegans Hypothetical
           protein C03E10.3 protein.
          Length = 386

 Score = 31.5 bits (68), Expect = 0.27
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 38  FLILNNIHHGEA-PFEDEQALGRCTLGVGNNLLVRGEKE 75
           F+I    HHG    + DE ++G C + +  N+ VRG K+
Sbjct: 131 FIIPEFTHHGNLFQYSDEISIGMCLINIVMNIFVRGGKK 169


>Z70038-8|CAA93887.2|  618|Caenorhabditis elegans Hypothetical
           protein ZK1067.6 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 39  LILNNIHH--GEAPFE--DEQALGRCTLGVGNNLLVRGEKEEIV 78
           ++ NN  H  GEA  +  +EQA   C  GV NN +  G+K+  +
Sbjct: 423 MVYNNQGHPSGEAFIQMINEQAASACAAGVHNNFMSVGKKKRYI 466


>Z68319-7|CAA92704.2|  618|Caenorhabditis elegans Hypothetical
           protein ZK1067.6 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 39  LILNNIHH--GEAPFE--DEQALGRCTLGVGNNLLVRGEKEEIV 78
           ++ NN  H  GEA  +  +EQA   C  GV NN +  G+K+  +
Sbjct: 423 MVYNNQGHPSGEAFIQMINEQAASACAAGVHNNFMSVGKKKRYI 466


>AY220985-1|AAO65265.1|  618|Caenorhabditis elegans putative RNA
           binding protein SYM-2 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 39  LILNNIHH--GEAPFE--DEQALGRCTLGVGNNLLVRGEKEEIV 78
           ++ NN  H  GEA  +  +EQA   C  GV NN +  G+K+  +
Sbjct: 423 MVYNNQGHPSGEAFIQMINEQAASACAAGVHNNFMSVGKKKRYI 466


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.140    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,744,106
Number of Sequences: 27539
Number of extensions: 140650
Number of successful extensions: 209
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 209
Number of HSP's gapped (non-prelim): 4
length of query: 151
length of database: 12,573,161
effective HSP length: 75
effective length of query: 76
effective length of database: 10,507,736
effective search space: 798587936
effective search space used: 798587936
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)