GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004590-TA|BGIBMGA004590-PA|undefined
         (53 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   0.68 
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    20   2.8  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    20   2.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    19   3.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    19   3.6  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
          dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 0.68
 Identities = 5/15 (33%), Positives = 11/15 (73%)

Query: 24 NNNEVVKTARWLQRN 38
          N N+++K   W+++N
Sbjct: 67 NQNDILKVIEWVEKN 81



 Score = 19.8 bits (39), Expect = 2.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 27  EVVKTARWLQRNTR 40
           E   TA+WL+ N+R
Sbjct: 197 ETDMTAQWLKENSR 210


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 19.8 bits (39), Expect = 2.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 30  KTARWLQRNTRHEWVLLEDRLD 51
           K  ++L  N    WVLLE + D
Sbjct: 88  KVVQFLIDNKPEIWVLLEAKYD 109


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 19.8 bits (39), Expect = 2.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 30  KTARWLQRNTRHEWVLLEDRLD 51
           K  ++L  N    WVLLE + D
Sbjct: 88  KVVQFLIDNKPEIWVLLEAKYD 109


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 19.4 bits (38), Expect = 3.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)

Query: 11  VGVFLTAVYGA 21
           VGV  +AVYGA
Sbjct: 587 VGVSFSAVYGA 597


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 19.4 bits (38), Expect = 3.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)

Query: 11  VGVFLTAVYGA 21
           VGV  +AVYGA
Sbjct: 677 VGVSFSAVYGA 687


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.140    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,495
Number of Sequences: 429
Number of extensions: 488
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 53
length of database: 140,377
effective HSP length: 33
effective length of query: 20
effective length of database: 126,220
effective search space:  2524400
effective search space used:  2524400
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.4 bits)
S2: 35 (18.2 bits)