GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004586-TA|BGIBMGA004586-PA|IPR001661|Glycoside
hydrolase, family 37, IPR008928|Six-hairpin glycosidase
         (559 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   2.2  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   8.8  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 59  KMSPKITLEHFYDMMSRTDSNPTKADIQEFVNQNFDPEGSEFEDWRPSDWKHN 111
           K+S    L   Y++ +  DS     +I + + QN D   +   D+R +D   N
Sbjct: 387 KISALRALNDLYNVKNTLDSYNGSMEINQNIAQNIDHAKNTIIDYRNNDLSIN 439


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 244 REHIHTLDKEFDYWMTNHTIEINHEGKKLKMAMYMDN-SQGPRP 286
           R+ I +L   ++Y   N+    N+  KKL    Y+ N  Q P P
Sbjct: 312 RKIISSLSNNYNYNNNNYKYNYNNYNKKLYYKNYIINIEQIPVP 355


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.137    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,021
Number of Sequences: 429
Number of extensions: 7748
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 2
length of query: 559
length of database: 140,377
effective HSP length: 61
effective length of query: 498
effective length of database: 114,208
effective search space: 56875584
effective search space used: 56875584
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)