GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004585-TA|BGIBMGA004585-PA|IPR011030|Lipovitellin,
superhelical, IPR001747|Lipid transport protein, N-terminal,
IPR001846|von Willebrand factor, type D
         (1782 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...   443   e-126
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    29   0.45 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   4.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   5.5  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    25   7.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   9.7  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   9.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score =  443 bits (1092), Expect = e-126
 Identities = 364/1400 (26%), Positives = 655/1400 (46%), Gaps = 95/1400 (6%)

Query: 429  KQNAMNAQK-ILQDIAQQLQNPNNMPKSDFLSKFNILVRLIASMSTEQLSQTSRSIETAK 487
            K + +NA K ++  IA +L++ +N+P    L KF IL  L+ +M+ +Q+S+   +++ + 
Sbjct: 418  KVDVINAAKELIFQIANELEDASNIPVHATLEKFMILCNLMRTMNRKQISELESNMQISP 477

Query: 488  TS------NNIIKSDMWMIFRDGVTQAGTLPAFKQIQSWIENKKIXXXXXXXXXXXLPRT 541
                    + +IK + W +FRD +TQ GT PAF  I+ WIE               LP+T
Sbjct: 478  NELKPNDKSQVIKQNTWTVFRDAITQTGTGPAFLTIKEWIERGTTKSMEAANIMSKLPKT 537

Query: 542  LRYPTKQIMTQFFNFARSPAVKDQMFLNSSALMAATKLINLGQVNNYTAHSYYPTHMYGR 601
            +R PT   +  FF   ++P V ++ FLN++A ++  ++I+  QVN  + H+ YP H +GR
Sbjct: 538  VRTPTDSYIRSFFELLQNPKVSNEQFLNTAATLSFCEMIHNAQVNKRSIHNNYPVHTFGR 597

Query: 602  LTHKHDAFVLEEILPTLAADLKASVEYKDSTKAQVYIQAIGNLGHREILKVFAPYLEGKV 661
            LT KHD  + +E +P L  +L+ + + KDS + Q YI A+G +G  +IL VF PYLEGK 
Sbjct: 598  LTSKHDNSLYDEYIPFLERELRKAHQEKDSPRIQTYIMALGMIGEPKILSVFEPYLEGKQ 657

Query: 662  EISTYLRTHIVKNLKSLAKLRDRHVRAVLFSILRNTAEPYPVRVAAIQSIFISHPTGEMM 721
            +++ + RT +V +L  L +   +  R+VL+ I  NT E + VR  A+  +  ++P   M+
Sbjct: 658  QMTVFQRTLMVGSLGKLTETNPKLARSVLYKIYLNTMESHEVRCTAVFLLMKTNPPLSML 717

Query: 722  QAMAEMTHNDPSVEVRAVLKSAILSAAELQHPRNFYLSRTAQAARYLVTNEEFGYQHSFK 781
            Q MAE T  D + +V + +KS I S  +L+ P    L++ A++  +L+T+ E+ Y+ S  
Sbjct: 718  QRMAEFTKLDTNRQVNSAVKSTIQSLMKLKSPEWKDLAKKARSVNHLLTHHEYDYELSRG 777

Query: 782  FIDDSYDEDNDIGT-FVISHIGSEDSLLPKDFKIVTNSKGGAWE--RNTIEASFSSAERF 838
            +ID+   E+ +I T  +++++GSEDS++P+   +   S  G  +     + A  SS + F
Sbjct: 778  YIDEKILENQNIITHMILNYVGSEDSVIPRILYLTWYSSNGDIKVPSTKVLAMISSVKSF 837

Query: 839  LDYLRDSVFAPHPKFDRAHKYSAEKIAKLLNIKNDEEEPLEASFYVDFMNNQRLFSFSES 898
            ++    SV     K       +AEKIA+ L I  +E  PLE +  ++     + F F + 
Sbjct: 838  MELSLRSV-----KDRETIISAAEKIAEELKIVPEELVPLEGNLMINNKYALKFFPFDKH 892

Query: 899  DLQQLSQYISEYMKKVESGAEKHYTKVYNQDQVSIMFPVASGMPFIFKYKEPAVIHFQSK 958
             L +L   IS Y++ V+ G   +   +   + V   FP  +G+PF++ +    VI   +K
Sbjct: 893  ILDKLPTLISNYIEAVKEGKFMNVNMLDTYESVH-SFPTETGLPFVYTFN---VIKL-TK 947

Query: 959  LKGKFSFPSKDNKYYEANMIKDVQFTYARNIDGNVGFMDTLSNQYSSVGVVNKLQFNIPF 1018
              G  +  ++ N  +   +  +++ T+++N+ G VGF+    +++   G+ + L    P 
Sbjct: 948  TSG--TVQAQINPDFAFIVNSNLRLTFSKNVQGRVGFVTPFEHRHFISGIDSNLHVYAPL 1005

Query: 1019 KFGIEIKS--GLIKFRVEPLHPDQDQTLVHYSVWPYSASQKKDSLVAISQDPATK-IVER 1075
            K  +++ +  G +++++ P+  ++   L HYSV P+ ++    +L  +S +  T+ ++  
Sbjct: 1006 KISLDVNTPKGNMQWKIWPMKGEEKSRLFHYSVVPFVSNHDILNLRPLSMEKGTRPMIPD 1065

Query: 1076 RSKVFSVDSKYGQSTHAVIYAQGYTYSSDWRNFGA-KFTSRDYFTNLASLLTQEDIALTH 1134
             +   ++    G     V  A+  T    W      K T R     L    T ++     
Sbjct: 1066 DNTSLALPKNEGPFRLNVETAK--TNEEMWELIDTEKLTDR-----LPYPWTMDNERYVK 1118

Query: 1135 FNLKHLCKQSQSKALTITAYYDEYY------NQQNSGILTDATDRNDLSPNSETRRAEMV 1188
             ++    +  Q   +  +  +D         + +N      A +  D   NS+TRR EM+
Sbjct: 1119 VDMYMNLEGEQKDPVIFSTSFDSKVMTRPDTDSENWTPKMMAVEPTDKQANSKTRRQEMM 1178

Query: 1189 KLVSAGINKARVRVVDLSASFEGSQDQNYVFTGTWGDSPVDSKVQGMLFAGTKSATQGNQ 1248
            +    GI  A+  VVD+     G  +   V T  W +S V+SK + +L        + N 
Sbjct: 1179 REAGRGIESAKSYVVDVRVHVPGESESETVLTLAWSESNVESKGR-LLGFWRVEMPRSNA 1237

Query: 1249 QINAVFAT---TKPEIHSLSFSKALQSDLRAPFGMHFKYGQS---GE-IRVSGSFDRTKK 1301
                   +     PE   LS+ + +    +  F +  +YG++   GE I ++G   ++ +
Sbjct: 1238 DYEVCIGSQIMVSPET-LLSYDEKMDQKPKMDFNVDIRYGKNCGKGERIDMNGKLRQSPR 1296

Query: 1302 YTTELENHPLAKQCSQQTTLNNFYQDSCHKAIVMAHAPDHVEFSVSFQDMSPQYRNFSYH 1361
                +    + K C +     N    +C KA+V++   D V+ S+           +S  
Sbjct: 1297 LKELVGATSIIKDCVEDMKRGNKILRTCQKAVVLSMLLDEVDISMEVPS-DALIALYSQG 1355

Query: 1362 TYRLYEY--LGYWYTEANPLKLTQNGKMDFKIDFS-YFDRTYTVDIASPSGEARMRDMPI 1418
             + L E   L      +NP K     K+D +   + Y D+   V + +P  +A  +D+ +
Sbjct: 1356 LFSLSEIDNLDVSLDVSNP-KNAGKKKIDVRAKLNEYLDKA-DVIVNTPIMDAHFKDVKL 1413

Query: 1419 ATMAPGALSFYQPLKAYELVANYFTGHQYQPYCSIDGTRIHTFSNRSYEYPLSRSWHVVM 1478
            +                 L+ N F  ++ +  C +D TR  TF  + Y   L   WH VM
Sbjct: 1414 SDFGFSTEDILDTADEDLLINNVF--YEDETSCMLDKTRAQTFDGKDYPLRLGPCWHAVM 1471

Query: 1479 ----------QDESTQRGNWHELAILSRRQQRDQQEIYISYKSESGQDLEIEIQPASGDS 1528
                       +E         +++LSR  +  Q+E+ +   S+     +I+  P    +
Sbjct: 1472 TTYPRINPDNHNEKLHIPKDKSVSVLSRENEAGQKEVKVLLGSD-----KIKFVPG---T 1523

Query: 1529 AYQVKVTTNTKKITDDDLTMYWDDVKEQPFLQYHTHKDGVLVINIEDDR--IRAIYDGQR 1586
              Q +V  N +KI       Y   V+E   + +  +K G   I +  D+  +    DG+R
Sbjct: 1524 TSQPEVFVNGEKIVVSRNKAY-QKVEENEII-FEIYKMGDRFIGLTSDKFDVSLALDGER 1581

Query: 1587 FVV-FTQDYRNSTRGICGRMSGEQRDDYLTPEG-LVDKPELYAAAYSLNEENSDPKTQEL 1644
             ++  ++DYR S RG+CG    +  +D++ P+  L  KPE + A+Y+L     +  +  +
Sbjct: 1582 VMLKASEDYRYSVRGLCGNFDHDSTNDFVGPKNCLFRKPEHFVASYALISNQCEGDSLNV 1641

Query: 1645 -KALATQQAYYPEYKYTSILRSDPTWQEESQSSGEDQWQSETVYKSRSYDKHKGACEVRQ 1703
             K+L        E      + SD      S+S   D   S   Y   + +KH   C +  
Sbjct: 1642 AKSLQDHDCIRQERTQQRNVISD------SESGRLDTEMSTWGY-HHNVNKH---CTI-H 1690

Query: 1704 QVQFYENHGDICITTSRVPSCQSHCRAGDYKIQHVQVTCKSKLDHDFRMYKEQIKKGQNP 1763
            + Q  E    IC T   V SC S C A + K +  +  C  K +   ++ K++I+KG NP
Sbjct: 1691 RTQVKETDDKICFTMRPVVSCASGCTAVETKSKPYKFHCMEKNEAAMKL-KKRIEKGANP 1749

Query: 1764 EVSGIP--SVKQFKVPVTCQ 1781
            ++S  P  + ++  VP  C+
Sbjct: 1750 DLSQKPVSTTEELTVPFVCK 1769



 Score =  117 bits (282), Expect = 7e-28
 Identities = 83/287 (28%), Positives = 134/287 (46%), Gaps = 17/287 (5%)

Query: 34  WQVGKQYRYEVTSRTLAHLQE--GPSSGSAFKAQFTIRVKSPGRLQAKLENPQHGNFNEQ 91
           WQVG +Y Y V SRTL  L +     +G   KA  T++ K    L AK+ N Q+    + 
Sbjct: 22  WQVGNEYTYLVRSRTLTSLGDLSDVHTGILIKALLTVQAKDSNVLAAKVWNGQYARVQQS 81

Query: 92  LPDPRELPVD---LKYQPTPNIDKVFEIEIDGGRIVSLDFPTSVPVPQENLIKGLISALQ 148
           +PD  E  +    L+ +  P   K F+I +  G I  L     VP  + N++K ++  LQ
Sbjct: 82  MPDGWETEISDQMLELRDLPISGKPFQIRMKHGLIRDLIVDRDVPTWEVNILKSIVGQLQ 141

Query: 149 LDTSAHRIIH-DSQNNYDREQQQGLFRKMETDVTGDCETLYTVSPVA------SEWRREL 201
           +DT     +  +S      ++    F+ ME  V G CE LY ++P++      S     +
Sbjct: 142 VDTQGENAVKVNSVQVPTDDEPYASFKAMEDSVGGKCEVLYDIAPLSDFVIHRSPELVPM 201

Query: 202 PKFANEQDPVEVTKSTNYGHCHHRVAYHFGVPVGAEWTGTAHKTQEQQLIGRATYSRILT 261
           P    +   +EV K  N+ +C  R+ YHFG+   +      +K    +   R++ SRI+ 
Sbjct: 202 PTLKGDGRHMEVIKIKNFDNCDQRINYHFGMTDNSRLEPGTNK--NGKFFSRSSTSRIVI 259

Query: 262 G---KEGPIYKAETTSTVHVHPHLYGKQKAEVYSHVHMELISVDQDS 305
               K   I  + TTS + V P LY +Q   V S +++ L  +++ S
Sbjct: 260 SESLKHFTIQSSVTTSKMMVSPRLYDRQNGLVLSRMNLTLAKMEKTS 306


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 28.7 bits (61), Expect = 0.45
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 586 NNYTAHSYYPTHMYGRLTHKHDAFVLEEILPTLAADLKASVEY 628
           N+YT+H +  TH+ G LT      +L    P   + LK  VE+
Sbjct: 121 NHYTSHQHLRTHLRGTLTVNVSVLLLSLASPD-ESSLKYEVEF 162


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 204  FANEQDPVEVTKSTNYGHCHHRVAYHFGVPVGAEWTGTAHKTQEQQLIGR--ATYSRI 259
            F  E DP +  +   + H  +  +   G PVG     +AH     Q + R    YSR+
Sbjct: 1733 FREEMDPSKAMQFQTFPHPGNGHSGTMGPPVGHPTNASAHSRSGSQSMPRQNGRYSRV 1790


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 198 RRELPKFANEQDPVEVTKSTNYGH 221
           R EL +FA  +D  E+ +  N GH
Sbjct: 255 REELEQFAENEDLEELCRGCNLGH 278


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
            preprohormone protein.
          Length = 107

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 1090 THAVIYAQGYTYSSDWRNFGAKFTSRDYFTNLASLLTQEDIALTHFNLKHL 1140
            T  ++  Q +TYS  W N G + TS +   N  ++  Q D    +  L+ L
Sbjct: 15   TITIVMCQTFTYSHGWTN-GKRSTSLEELANRNAI--QSDNVFANCELQKL 62


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 575 AATKLINLGQVNNYTAHSYYPTH 597
           AAT L+ + +V  +TAH  +P H
Sbjct: 153 AATSLLVVAEVCYFTAHVTHPRH 175


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
            kinase foraging protein.
          Length = 678

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 16/42 (38%), Positives = 20/42 (47%)

Query: 1608 EQRDDYLTPEGLVDKPELYAAAYSLNEENSDPKTQELKALAT 1649
            E R  Y      V+  E  A    LNEE  D + Q+L+ LAT
Sbjct: 331  EIRTRYKDSSSSVEGWENRATIPELNEEFRDLRLQDLRPLAT 372


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.131    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 499,465
Number of Sequences: 429
Number of extensions: 22283
Number of successful extensions: 78
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 11
length of query: 1782
length of database: 140,377
effective HSP length: 68
effective length of query: 1714
effective length of database: 111,205
effective search space: 190605370
effective search space used: 190605370
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)