GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004583-TA|BGIBMGA004583-PA|undefined
         (189 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    25   0.46 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.1  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   4.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.9  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 25.0 bits (52), Expect = 0.46
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 86  EEYSRPPILNGYGSSSSHEVK 106
           +E S+P  LNGYGSS   + +
Sbjct: 153 DELSQPGSLNGYGSSDGCDAR 173


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 62  EDCNLSYMSGEDHMMQTEDYPSSHEEYSRPPILNGYGSSSSHEVKAEDLSANDTQDIKPN 121
           EDCN S+    D + Q  +    + +     +   +  +++ +  + D+   D Q     
Sbjct: 531 EDCNKSF---NDLLTQVAELDQIYADTHAKLVQAAFEQNTTDQ--SMDIDVCDNQTYTSL 585

Query: 122 IYALKNEIQASDYSNK 137
             A+KN I+ +D SN+
Sbjct: 586 QMAMKNPIEFTDLSNE 601


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 96  GYGSSSSHEVKAEDLSANDTQDIK 119
           GY +    ++K  DLSA+D Q ++
Sbjct: 425 GYQAICKPKLKIADLSAHDKQAVR 448


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 2/84 (2%)

Query: 41  PMMTSPH--GYSEALKRNLQGMMEDCNLSYMSGEDHMMQTEDYPSSHEEYSRPPILNGYG 98
           PM+ +P   G    +  N    +E+  +S  +   + + +++  SS EE  +  ILN   
Sbjct: 310 PMVDNPESTGNLVYIYNNPFSDVEERRVSKTAMNSNQIVSDNSLSSSEEKLKQDILNLRT 369

Query: 99  SSSSHEVKAEDLSANDTQDIKPNI 122
             SS          ND    KP +
Sbjct: 370 DISSSSSSISSSEENDFWQPKPTL 393


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 5/20 (25%), Positives = 13/20 (65%)

Query: 63  DCNLSYMSGEDHMMQTEDYP 82
           +C++ ++ G ++   T +YP
Sbjct: 685 NCSMDWLPGINNQTSTREYP 704


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.127    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,489
Number of Sequences: 429
Number of extensions: 2690
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 189
length of database: 140,377
effective HSP length: 54
effective length of query: 135
effective length of database: 117,211
effective search space: 15823485
effective search space used: 15823485
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.2 bits)
S2: 41 (20.6 bits)