GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004581-TA|BGIBMGA004581-PA|undefined
         (433 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    24   2.2  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    24   2.9  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   3.8  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 12/44 (27%), Positives = 23/44 (52%)

Query: 62  QHSASERHRERKQEIQNIRSRLFMGKQAKIKEMYEQSVMQSEQS 105
           Q    E+ RER++E +    R+   +Q + ++  +Q   Q +QS
Sbjct: 65  QRKEMEQMREREREQREHSDRVTSQQQQQQQQQQQQDQQQQQQS 108


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 10/45 (22%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 96  EQSVMQSEQSVTSADKIARDLELDKEKARAIKQRFEN--GELFND 138
           ++ + ++++ V    + A ++EL+      ++Q FEN    + ND
Sbjct: 164 QKXIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILND 208


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 273 TSHIISVFRQLEHSQQQQQP 292
           T+ I +V   ++H+Q QQQP
Sbjct: 72  TTAIKNVLGSMQHAQMQQQP 91


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.129    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,781
Number of Sequences: 429
Number of extensions: 4076
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 3
length of query: 433
length of database: 140,377
effective HSP length: 60
effective length of query: 373
effective length of database: 114,637
effective search space: 42759601
effective search space used: 42759601
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 45 (22.2 bits)