GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004580-TA|BGIBMGA004580-PA|IPR001781|LIM, zinc-binding
         (224 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    26   0.33 
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   3.1  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   4.0  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   7.1  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   7.1  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   9.3  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   9.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.3  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 71  GESNPKCEKCARPVYAMERIMAERRVWHKD-CFRCVQCNK 109
           GE   +CE C++     E +   RR+  K+  ++C  C +
Sbjct: 116 GEKPYQCEYCSKSFSVKENLSVHRRIHTKERPYKCDVCER 155


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 100 DCFRCVQCNKQLTVETYQSDH 120
           D FRC  CNK LT  T    H
Sbjct: 1   DEFRCEPCNKILTSLTRLRRH 21


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 3/33 (9%)

Query: 102 FRCVQCNKQLTVETYQSDHTTLYC--KP-HFKH 131
           F C +C+K+ T + +   H  L+   KP H  H
Sbjct: 10  FECPECHKRFTRDHHLKTHMRLHTGEKPYHCSH 42


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/49 (18%), Positives = 21/49 (42%)

Query: 75  PKCEKCARPVYAMERIMAERRVWHKDCFRCVQCNKQLTVETYQSDHTTL 123
           P C +     Y+++R   ++       + C  CN++   +   + H +L
Sbjct: 9   PYCRRNFSCYYSLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTHKSL 57


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 77  CEKCARPVYAMERIMAERRVWHKDCFRCVQCNKQLTVETYQSDHTTLYCK 126
           C K      +++R +A++    ++ +RCV C +          H   Y K
Sbjct: 11  CGKVLCSKASLKRHVADKHAERQEEYRCVICERVYCSRNSLMTHIYTYHK 60


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
          protein.
          Length = 300

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 1  MALATAKATMESQNLIQTESRVQHSYQEVVTEQR 34
          +A A +K T+     ++   +VQH  +++  EQR
Sbjct: 19 VAAAISKTTVAPIERVKLLLQVQHISKQISEEQR 52


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
          protein.
          Length = 300

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 1  MALATAKATMESQNLIQTESRVQHSYQEVVTEQR 34
          +A A +K T+     ++   +VQH  +++  EQR
Sbjct: 19 VAAAISKTTVAPIERVKLLLQVQHISKQISEEQR 52


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 102 FRCVQCNKQLTVETYQSDH 120
           FRC   N  +  E YQS +
Sbjct: 444 FRCSNLNHMMREEFYQSQY 462


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.128    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,485
Number of Sequences: 429
Number of extensions: 2564
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 224
length of database: 140,377
effective HSP length: 55
effective length of query: 169
effective length of database: 116,782
effective search space: 19736158
effective search space used: 19736158
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 42 (21.0 bits)