GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004577-TA|BGIBMGA004577-PA|IPR001212|Somatomedin B,
IPR000436|Sushi/SCR/CCP, IPR000998|MAM
         (520 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    30   0.053
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.87 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   2.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   3.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   4.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   8.1  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 29.9 bits (64), Expect = 0.053
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 10/95 (10%)

Query: 50  KYSCDFEEDLCGWIQDEFHDFDWKRLNTKT----PSSFTLTGPWFDHTYGSRGKGHFMYI 105
           KY    E +  GW+++ F +FD K +N ++      ++     W    +  RG  + MYI
Sbjct: 30  KYPFGAEANTPGWVEESFTNFD-KGINWRSYVVCDVAYNNVNNWLWTPFIERGPANRMYI 88

Query: 106 ESTGRFINDTARLLSPIYDSAIAKDGCFQLYYHMY 140
           E     I  T R  S    +A++    F L Y+ +
Sbjct: 89  E-----IKFTTRDCSLFPGNALSCKETFSLLYYEF 118


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.8 bits (54), Expect = 0.87
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 395 PTTQSSSITPKSATRKVTSVASTTVGSKKLTSSTTVKP 432
           P T  ++IT  + T   T+  +TT  + +  S+TT  P
Sbjct: 654 PATTITTITTTTTTTTTTTTTTTTPNTTQNASATTPPP 691



 Score = 22.6 bits (46), Expect = 8.1
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 5/88 (5%)

Query: 396 TTQSSSITPKSATRKVTSVASTTVGSKKLTSSTTVKPASTSKKVTEKQSFTKKMTVDVFV 455
           +T S    P +    +T++ +TT      T++TT    +T        + T    VD   
Sbjct: 643 STHSHPHEPGAPATTITTITTTTT-----TTTTTTTTTTTPNTTQNASATTPPPQVDEVD 697

Query: 456 AKKSKGASKTLQTSGIIVGVLFCVFALV 483
            K+  GA +  +    ++  L  +  LV
Sbjct: 698 DKELSGAEEEKEVEKALLKPLLSLEDLV 725


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 386 QKQTTKVLKPTTQSSSITPKSATRKVTSVASTTVGSKKLTS-STTVKPAS 434
           Q    +  +PT+ ++S+TP    ++    A+  + ++KL + S+   P S
Sbjct: 81  QADLAEASQPTSTTTSVTPSCRRQRYNIAAANPLLAEKLAAPSSQASPTS 130


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 18/75 (24%), Positives = 31/75 (41%)

Query: 409 RKVTSVASTTVGSKKLTSSTTVKPASTSKKVTEKQSFTKKMTVDVFVAKKSKGASKTLQT 468
           + V S ++TT      T ST V+    S          KK+   +   +K+      + +
Sbjct: 320 KPVLSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSPHQKKLRFHLAKERKASTTLGIIMS 379

Query: 469 SGIIVGVLFCVFALV 483
           + I+  + F V ALV
Sbjct: 380 AFIVCWLPFFVLALV 394


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 395 PTTQSSSITPKSATRKVTSVASTTVGSKKLT 425
           P   SSS +P S +   +SV+ T++GS+  T
Sbjct: 84  PGGGSSSPSPSSPSSFFSSVSPTSLGSENYT 114


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 8.1
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 32  WNSTA-PKCVEMNNNVTTIKYSCDFEEDLCGWIQDEFH 68
           W  T   + VE++         C F ++L  W+ D  H
Sbjct: 908 WQVTLNARLVELSLGSNPWSCRCKFLQELSSWVSDNAH 945


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,872
Number of Sequences: 429
Number of extensions: 5208
Number of successful extensions: 21
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 8
length of query: 520
length of database: 140,377
effective HSP length: 61
effective length of query: 459
effective length of database: 114,208
effective search space: 52421472
effective search space used: 52421472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)