GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004576-TA|BGIBMGA004576-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like, IPR009078|Ferritin/ribonucleotide reductase-like
         (1504 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    33   0.013
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   2.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   2.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   3.5  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    25   4.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    25   4.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   6.2  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   8.1  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 33.5 bits (73), Expect = 0.013
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 8/84 (9%)

Query: 185 QNLKKASNFVDIVNRSLDAEASKLLADLRDVRL---PN-KIETTNIQKYTVEWIGRDGLD 240
           Q LKKA NF D+V   +  +    L D RDV +    N  I+ +   ++   W+G DGL 
Sbjct: 69  QVLKKAENFKDVVKIWVGPKLVICLIDPRDVEIILSSNVYIDKSTEYRFFKPWLG-DGLL 127

Query: 241 TETHSEYLNH--FIA-HFYKNIIK 261
             T  ++ NH   IA  F+ N++K
Sbjct: 128 ISTGQKWRNHRKLIAPTFHLNVLK 151


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 10/69 (14%)

Query: 1021 WNKIYSSDPDRGYQISIYQLN----DEEGCWDKIEELHHRETDTAEAMLQLKRGKKDKML 1076
            W K     P  G Q  + +LN    ++ G +  I  +   E DTA+A  +L+ G    ML
Sbjct: 367  WYKDGRQLPGTGRQSELLRLNGINREDRGMYQCI--VRRSEGDTAQASAELQLGNAPPML 424

Query: 1077 LATTTYSFV 1085
            L    YSF+
Sbjct: 425  L----YSFI 429


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 10/69 (14%)

Query: 1021 WNKIYSSDPDRGYQISIYQLN----DEEGCWDKIEELHHRETDTAEAMLQLKRGKKDKML 1076
            W K     P  G Q  + +LN    ++ G +  I  +   E DTA+A  +L+ G    ML
Sbjct: 367  WYKDGRQLPGTGRQSELLRLNGINREDRGMYQCI--VRRSEGDTAQASAELQLGNAPPML 424

Query: 1077 LATTTYSFV 1085
            L    YSF+
Sbjct: 425  L----YSFI 429


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 16/43 (37%), Positives = 21/43 (48%)

Query: 184 LQNLKKASNFVDIVNRSLDAEASKLLADLRDVRLPNKIETTNI 226
           L N  K    V  V  +L  +    L+ L DV L N+I TTN+
Sbjct: 33  LSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNL 75


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
            protein.
          Length = 484

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 1015 MALSKNWNKIYSSDPDRGYQISIYQLNDEEGCW 1047
            M +  N   I +S     Y +S Y LN E+  W
Sbjct: 1    MEIGNNETNITNSSITETYFVSAYNLNQEDSNW 33


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 574 VRRIPPLLWTRIRNDLPNYLSEREADG 600
           +RR+P LL  R+ +DL N L+  +  G
Sbjct: 341 IRRLPKLLLMRVPDDLLNDLAAHKMHG 367


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 14/53 (26%), Positives = 26/53 (49%)

Query: 162 ILNVKNTKNHCLAYVRYINNINLQNLKKASNFVDIVNRSLDAEASKLLADLRD 214
           ILN+   K   +    +  N+ L+ ++   NF+  +N    + AS LL +L +
Sbjct: 506 ILNLARNKVQHVERYAFERNMRLEAIRLDGNFLSDINGVFTSIASLLLLNLSE 558



 Score = 24.6 bits (51), Expect = 6.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 1183 IKVLDAHFGRIVQLEPLTV 1201
            +K LDA   RI +L PL+V
Sbjct: 597  VKTLDASHNRITELSPLSV 615


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 880 SPDNKWAAASTNNSVSMLLNMLTSEYVTIDNPL--DEGETVRGVFVLNHHMIIYGPRSWV 937
           S  +KW   S NN+ +   N     Y+ +D P+  D+G  ++  +  N+ + ++    W 
Sbjct: 124 SDQHKWFQMSINNTNNNNTNKYKDYYIWVD-PVKDDKGNPIKDKYP-NNWLSVFNGTGWT 181

Query: 938 QYSMR 942
            +  R
Sbjct: 182 FHEGR 186


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 430,637
Number of Sequences: 429
Number of extensions: 18660
Number of successful extensions: 58
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 11
length of query: 1504
length of database: 140,377
effective HSP length: 67
effective length of query: 1437
effective length of database: 111,634
effective search space: 160418058
effective search space used: 160418058
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)