GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004575-TA|BGIBMGA004575-PA|undefined
         (90 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC030705-1|AAH30705.1|  755|Homo sapiens SUMO1/sentrin specific ...    28   4.0  
U86136-1|AAC51107.1| 2627|Homo sapiens telomerase-associated pro...    27   6.9  
BC126107-1|AAI26108.1| 2627|Homo sapiens telomerase-associated p...    27   6.9  

>BC030705-1|AAH30705.1|  755|Homo sapiens SUMO1/sentrin specific
           peptidase 5 protein.
          Length = 755

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 20  VSSKIVRIFTSSTFTDTTMERNTLMAKCYPRIKDYCREKHGLEFQTSFTLVSGMFGFKNG 79
           V  K  + F SS+ T   ++   L++       +YCREK+ L+  T F   S + G  NG
Sbjct: 96  VKRKDAKHFISSSKTLLRLQAEKLLSSAKNSDHEYCREKNLLKAVTDFPSNSAL-GQANG 154

Query: 80  N 80
           +
Sbjct: 155 H 155


>U86136-1|AAC51107.1| 2627|Homo sapiens telomerase-associated
           protein TP-1 protein.
          Length = 2627

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)

Query: 17  LPPVSS---KIVRIFTSSTFTDTTMERNTLMAKCYPRIK 52
           L PVS    + +R+F SSTF D   ER+ L+    P ++
Sbjct: 888 LAPVSQQGWRSIRLFISSTFRDMHGERDLLLRSVLPALQ 926


>BC126107-1|AAI26108.1| 2627|Homo sapiens telomerase-associated
           protein 1 protein.
          Length = 2627

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)

Query: 17  LPPVSS---KIVRIFTSSTFTDTTMERNTLMAKCYPRIK 52
           L PVS    + +R+F SSTF D   ER+ L+    P ++
Sbjct: 888 LAPVSQQGWRSIRLFISSTFRDMHGERDLLLRSVLPALQ 926


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.322    0.136    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,523,586
Number of Sequences: 224733
Number of extensions: 377114
Number of successful extensions: 649
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 649
Number of HSP's gapped (non-prelim): 3
length of query: 90
length of database: 73,234,838
effective HSP length: 68
effective length of query: 22
effective length of database: 57,952,994
effective search space: 1274965868
effective search space used: 1274965868
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)