GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004573-TA|BGIBMGA004573-PA|IPR006649|Like-Sm
ribonucleoprotein, eukaryotic and archaea-type, core,
IPR001163|Like-Sm ribonucleoprotein, core, IPR010920|Like-Sm
ribonucleoprotein-related, core
         (76 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    24   0.18 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   3.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             19   9.1  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 24.2 bits (50), Expect = 0.18
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 25  RAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLESLDRL 76
           R V   + GFDP++    DE +E+  D +   +   +  G +I  L  L ++
Sbjct: 225 RMVDENINGFDPYVKTPNDEELEKPTDKRMFVLAASIKAGYTIDRLYELTKI 276


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 19.8 bits (39), Expect = 3.9
 Identities = 7/14 (50%), Positives = 12/14 (85%)

Query: 34  FDPFMNLVLDESVE 47
           +DP + LV+DE++E
Sbjct: 195 WDPDVPLVVDENIE 208


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 18.6 bits (36), Expect = 9.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)

Query: 15  KKLSIKLNAGRAVTG 29
           K +S+K   G+ V+G
Sbjct: 953 KSISVKFQEGQTVSG 967


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.138    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,186
Number of Sequences: 429
Number of extensions: 561
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 76
length of database: 140,377
effective HSP length: 46
effective length of query: 30
effective length of database: 120,643
effective search space:  3619290
effective search space used:  3619290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.5 bits)
S2: 36 (18.6 bits)