Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA004570-TA|BGIBMGA004570-
PA|IPR000175|Sodium:neurotransmitter symporter
(635 letters)
Database: bee
429 sequences; 140,377 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 571 e-165
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 571 e-165
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 364 e-102
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 23 5.8
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 23 5.8
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 571 bits (1410), Expect = e-165
Identities = 244/333 (73%), Positives = 288/333 (86%)
Query: 298 GITLPGALEGIKFYVMPNMSKLLESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFTNNVY 357
G+TLPGA+EG+K+YV PN+SKL + EVWIDAVTQIFFSY LGLG LVALGSYNKF NNVY
Sbjct: 253 GLTLPGAMEGLKYYVTPNLSKLSDPEVWIDAVTQIFFSYALGLGALVALGSYNKFNNNVY 312
Query: 358 KDALIVCSVNSSTSMFAGFVIFSVVGFMAHEQQRPVAEVAASGPGLAFLAYPSAVLQLPG 417
KDALIVC+VNS TSM +G VIFSVVGFMAHEQQ+PVA+VA SGPGLAFL YPSAVL+LPG
Sbjct: 313 KDALIVCTVNSCTSMLSGIVIFSVVGFMAHEQQKPVADVAVSGPGLAFLVYPSAVLELPG 372
Query: 418 APLWSCLFFFMLLLIGLDSQFCTMEGFVTAVIDEWPKLLRRRKEVFIAITCVISYLVGLS 477
+ +WSCLFFFML+LIGLDSQFCT+EGF+TA +DEWP+LLR+RKE+FIAI C +SYL+GL
Sbjct: 373 SSIWSCLFFFMLILIGLDSQFCTVEGFITAAVDEWPRLLRKRKELFIAIVCFVSYLIGLF 432
Query: 478 CISEGGMYVFQILDSYAVSGFCLLFLIFFECVSISWAFGVNRFYDGIKEMIGYYPMIWWK 537
CI+EGGMYVFQ+LDSYAVSGFCLLFL+FFEC++ISWAFGVNRFYDGI++MIGYYP WWK
Sbjct: 433 CITEGGMYVFQLLDSYAVSGFCLLFLMFFECIAISWAFGVNRFYDGIRDMIGYYPCCWWK 492
Query: 538 FCWVGFTPAICISVFIFNLVQWTPIKYMNYEYPWWSHAFGWFTALSSMLCIPGYMVYLWR 597
CW TPAIC+ VF FN++++ P+KY+ YEYPWWSH GW LSSMLCIPGYM+Y+W
Sbjct: 493 ICWTITTPAICVGVFTFNIIKFVPVKYLTYEYPWWSHVLGWLCGLSSMLCIPGYMIYIWF 552
Query: 598 VTPGTWHEKFNTIVRIPEDVPSLRTKMQAEEQA 630
T GT EKF ++RI +DV +LR K+ + A
Sbjct: 553 TTSGTISEKFRKLIRIEDDVATLRMKLNPTKAA 585
Score = 391 bits (963), Expect = e-111
Identities = 166/238 (69%), Positives = 199/238 (83%), Gaps = 1/238 (0%)
Query: 27 LPERESWASKLDFILSVVGLAIGLGNVWRFPYLCYKNGGGAFLIPYFLTLFLAGIPMFFM 86
LP+R W+SK++FILSVVGLAIGLGN+WRFPYLCYKNGGGAF++PYF+ L LAG+PMF M
Sbjct: 16 LPDRGMWSSKIEFILSVVGLAIGLGNLWRFPYLCYKNGGGAFMVPYFIALALAGVPMFLM 75
Query: 87 ELAMGQMLTIGGLGVFKIAPIFKGIGYAAAVMSCWMNVYYIVILAWAIFYFFMSMRSDVP 146
EL++GQM+TIGGLGVFKIAPIFKGIGYA V+SCW N+YYI+ILAWA+FY +S+R D+P
Sbjct: 76 ELSLGQMMTIGGLGVFKIAPIFKGIGYATCVLSCWTNIYYIIILAWALFYLLVSLRIDLP 135
Query: 147 WRNCDNYWNTPSCVNPYDRKNLTCWSSKDMSTYCILNGKNFTKAMLSDPVKEFWERRALQ 206
WR C N WNT C+ P +R CW ++D C N + A+L DPVKEFWERR LQ
Sbjct: 136 WRTCGNPWNTRYCLTPTERLEALCW-TQDEDVICSTPIGNLSHALLKDPVKEFWERRTLQ 194
Query: 207 ISSGIEHIGNIRWELAGTLLLVWVLCYFCIWKGVRWTGKVVYFTALFPYFLLTVLLIR 264
IS GIE+IG+IRWELAGTL +VW++CYFCIWKGV+WTGKVVYFT+LFPY LLT+LLIR
Sbjct: 195 ISDGIENIGSIRWELAGTLAVVWIMCYFCIWKGVKWTGKVVYFTSLFPYALLTILLIR 252
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 571 bits (1409), Expect = e-165
Identities = 244/333 (73%), Positives = 289/333 (86%)
Query: 298 GITLPGALEGIKFYVMPNMSKLLESEVWIDAVTQIFFSYGLGLGTLVALGSYNKFTNNVY 357
G+TLPGA+EG+K+YV PN+SKL + EVWIDAVTQIFFSY LGLG LVALGSYNKF NNVY
Sbjct: 306 GLTLPGAMEGLKYYVTPNLSKLSDPEVWIDAVTQIFFSYALGLGALVALGSYNKFNNNVY 365
Query: 358 KDALIVCSVNSSTSMFAGFVIFSVVGFMAHEQQRPVAEVAASGPGLAFLAYPSAVLQLPG 417
KDALIVC+VNS TSM +G VIFSVVGFMAHEQQ+PVA+VAASGPGLAFL YPSAVL+LPG
Sbjct: 366 KDALIVCTVNSCTSMLSGIVIFSVVGFMAHEQQKPVADVAASGPGLAFLVYPSAVLELPG 425
Query: 418 APLWSCLFFFMLLLIGLDSQFCTMEGFVTAVIDEWPKLLRRRKEVFIAITCVISYLVGLS 477
+ +WSCLFFFML+LIGLDSQFCT+EGF+TA +DEWP+LLR+RKE+FIAI C +SYL+GL
Sbjct: 426 SSIWSCLFFFMLILIGLDSQFCTVEGFITAAVDEWPRLLRKRKELFIAIVCFVSYLIGLF 485
Query: 478 CISEGGMYVFQILDSYAVSGFCLLFLIFFECVSISWAFGVNRFYDGIKEMIGYYPMIWWK 537
CI+EGGMYVFQ+LDSYAVSGFCLLFL+FFEC++ISWAFGVNRFYDGI++MIGYYP WWK
Sbjct: 486 CITEGGMYVFQLLDSYAVSGFCLLFLMFFECIAISWAFGVNRFYDGIRDMIGYYPCCWWK 545
Query: 538 FCWVGFTPAICISVFIFNLVQWTPIKYMNYEYPWWSHAFGWFTALSSMLCIPGYMVYLWR 597
CW TPAIC+ VF FN++++ P+KY+ YEYPWWSH GW LSSMLCIPGYM+Y+W
Sbjct: 546 ICWTITTPAICVGVFTFNIIKFVPVKYLTYEYPWWSHVLGWLCGLSSMLCIPGYMIYIWF 605
Query: 598 VTPGTWHEKFNTIVRIPEDVPSLRTKMQAEEQA 630
T GT EKF ++RI ++V +LR K+ + A
Sbjct: 606 TTSGTISEKFRKLIRIEDNVATLRMKLNPTKAA 638
Score = 391 bits (962), Expect = e-110
Identities = 166/238 (69%), Positives = 199/238 (83%), Gaps = 1/238 (0%)
Query: 27 LPERESWASKLDFILSVVGLAIGLGNVWRFPYLCYKNGGGAFLIPYFLTLFLAGIPMFFM 86
LP+R W+SK++FILSVVGLAIGLGN+WRFPYLCYKNGGGAF++PYF+ L LAG+PMF M
Sbjct: 69 LPDRGMWSSKIEFILSVVGLAIGLGNLWRFPYLCYKNGGGAFMVPYFIALALAGVPMFLM 128
Query: 87 ELAMGQMLTIGGLGVFKIAPIFKGIGYAAAVMSCWMNVYYIVILAWAIFYFFMSMRSDVP 146
EL++GQM+TIGGLGVFKIAPIFKGIGYA V+SCW N+YYI+ILAWA+FY +S+R D+P
Sbjct: 129 ELSLGQMMTIGGLGVFKIAPIFKGIGYATCVLSCWTNIYYIIILAWALFYLLVSLRIDLP 188
Query: 147 WRNCDNYWNTPSCVNPYDRKNLTCWSSKDMSTYCILNGKNFTKAMLSDPVKEFWERRALQ 206
WR C N WNT C+ P +R CW ++D C N + A+L DPVKEFWERR LQ
Sbjct: 189 WRTCGNPWNTRYCLTPTERLEALCW-TQDEDIICSTPIGNLSHALLKDPVKEFWERRTLQ 247
Query: 207 ISSGIEHIGNIRWELAGTLLLVWVLCYFCIWKGVRWTGKVVYFTALFPYFLLTVLLIR 264
IS GIE+IG+IRWELAGTL +VW++CYFCIWKGV+WTGKVVYFT+LFPY LLT+LLIR
Sbjct: 248 ISDGIENIGSIRWELAGTLAVVWIMCYFCIWKGVKWTGKVVYFTSLFPYALLTILLIR 305
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 364 bits (896), Expect = e-102
Identities = 159/202 (78%), Positives = 177/202 (87%), Gaps = 4/202 (1%)
Query: 50 LGNVWRFPYLCYKNGGGAFLIPYFLTLFLAGIPMFFMELAMGQMLTIGGLGVFKIAPIFK 109
L NVWRFPYLCYKNGGGAFLIPYFLTL LAGIPMFFMELA+GQMLT+GGLGVFKIAP+FK
Sbjct: 1 LANVWRFPYLCYKNGGGAFLIPYFLTLVLAGIPMFFMELALGQMLTVGGLGVFKIAPLFK 60
Query: 110 GIGYAAAVMSCWMNVYYIVILAWAIFYFFMSMRSDVPWRNCDNYWNTPSCVNPYDRKNLT 169
GIGYAAAVMSCWMNVYYIVILAWAIFYFFMSMRS++PW +C+NYWNT +CVNPYDR +L+
Sbjct: 61 GIGYAAAVMSCWMNVYYIVILAWAIFYFFMSMRSELPWGSCNNYWNTKNCVNPYDRDSLS 120
Query: 170 CW----SSKDMSTYCILNGKNFTKAMLSDPVKEFWERRALQISSGIEHIGNIRWELAGTL 225
CW + C +N N T L+DPVKEFWERRALQIS G+E++GNIRWELAGTL
Sbjct: 121 CWLQMTKHHNFIKVCSVNDVNMTITELTDPVKEFWERRALQISEGVEYVGNIRWELAGTL 180
Query: 226 LLVWVLCYFCIWKGVRWTGKVV 247
LLVW+LCYFCIWKGV+ TGKVV
Sbjct: 181 LLVWILCYFCIWKGVKTTGKVV 202
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 23.4 bits (48), Expect = 5.8
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 571 WWSHAFGW--FTALSSMLCIPGY 591
+W + W F A+S MLCI GY
Sbjct: 321 FWLEQYSWALFKAMSHMLCI-GY 342
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 23.4 bits (48), Expect = 5.8
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 571 WWSHAFGW--FTALSSMLCIPGY 591
+W + W F A+S MLCI GY
Sbjct: 289 FWLEQYSWALFKAMSHMLCI-GY 310
Database: bee
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 140,377
Number of sequences in database: 429
Lambda K H
0.328 0.142 0.480
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,853
Number of Sequences: 429
Number of extensions: 8342
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 9
length of query: 635
length of database: 140,377
effective HSP length: 62
effective length of query: 573
effective length of database: 113,779
effective search space: 65195367
effective search space used: 65195367
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 47 (23.0 bits)
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