GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004567-TA|BGIBMGA004567-PA|IPR003663|Sugar transporter,
IPR005828|General substrate transporter, IPR007114|Major facilitator
superfamily, IPR005829|Sugar transporter superfamily
         (503 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    26   0.84 
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    24   2.6  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    24   2.6  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    24   2.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    24   2.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.5  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.8 bits (54), Expect = 0.84
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 394 EYKSIGGTISLATMSVSFFLVLKTFPGLVDSVGVHGTY 431
           E  S+G TI L +++V   +V +T P   D+V + GTY
Sbjct: 261 EKLSLGVTI-LLSLTVFLNMVAETMPATSDAVPLLGTY 297


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 394 EYKSIGGTISLATMSVSFFLVLKTFPGLVDSVGVHGTYTVYSLMLCYCLLVIWILL 449
           E  ++G TI L +++V   LV +T P + D++ + G+Y    + +    +V+ +L+
Sbjct: 224 EKLTLGVTI-LLSLTVFLNLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLV 278


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 394 EYKSIGGTISLATMSVSFFLVLKTFPGLVDSVGVHGTYTVYSLMLCYCLLVIWILL 449
           E  ++G TI L +++V   LV +T P + D++ + G+Y    + +    +V+ +L+
Sbjct: 224 EKLTLGVTI-LLSLTVFLNLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLV 278


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 394 EYKSIGGTISLATMSVSFFLVLKTFPGLVDSVGVHGTYTVYSLMLCYCLLVIWILL 449
           E  ++G TI L +++V   LV +T P + D++ + G+Y    + +    +V+ +L+
Sbjct: 224 EKLTLGVTI-LLSLTVFLNLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLV 278


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 394 EYKSIGGTISLATMSVSFFLVLKTFPGLVDSVGVHGTYTVYSLMLCYCLLVIWILL 449
           E  ++G TI L +++V   LV +T P + D++ + G+Y    + +    +V+ +L+
Sbjct: 292 EKLTLGVTI-LLSLTVFLNLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLV 346


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 9/38 (23%), Positives = 18/38 (47%)

Query: 180 FVSLVMTIYSPESPSWLASKNRYEESREVFRWLRGNDE 217
           F+ ++  +     P +    NRY   R + R +RG ++
Sbjct: 349 FIHILPRLLVMRRPQYKFETNRYSSGRVLMRTVRGKEK 386


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 9/38 (23%), Positives = 18/38 (47%)

Query: 180 FVSLVMTIYSPESPSWLASKNRYEESREVFRWLRGNDE 217
           F+ ++  +     P +    NRY   R + R +RG ++
Sbjct: 349 FIHILPRLLVMRRPQYKFETNRYSSGRVLMRTVRGKEK 386


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.139    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,149
Number of Sequences: 429
Number of extensions: 5564
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 7
length of query: 503
length of database: 140,377
effective HSP length: 61
effective length of query: 442
effective length of database: 114,208
effective search space: 50479936
effective search space used: 50479936
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 46 (22.6 bits)