GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004566-TA|BGIBMGA004566-PA|IPR005828|General substrate
transporter, IPR007114|Major facilitator superfamily
         (361 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   2.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   2.3  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   7.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   7.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 10/38 (26%), Positives = 21/38 (55%)

Query: 189 IHKFKRRTMMFSAGGLSLASHIGIIFYVYLRNNNSLPV 226
           +H+  R+ ++ S   + +A H G++  V L N+  + V
Sbjct: 212 MHRLTRQVVVSSVANVRIADHRGVMPPVILENSGVVHV 249


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 10/38 (26%), Positives = 21/38 (55%)

Query: 189 IHKFKRRTMMFSAGGLSLASHIGIIFYVYLRNNNSLPV 226
           +H+  R+ ++ S   + +A H G++  V L N+  + V
Sbjct: 212 MHRLTRQVVVSSVANVRIADHRGVMPPVILENSGVVHV 249


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 172 VIFDTERILTNTLAVFIIHKFKRRTMMFSAGGLSLASHIGIIFYVYLRNNNSLPVT 227
           VI DT R         I H F+  TM+F    +++   + I+  + LR +  L  T
Sbjct: 204 VILDTARCSMKW--TLIEHAFEISTMLFFVLPMTIIIVLYILIAIKLRRSRMLTAT 257


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)

Query: 316 LMPETKGKTLQEIEDGFR 333
           LM ET   TLQE  D F+
Sbjct: 382 LMDETNQLTLQETADAFK 399


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.138    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,864
Number of Sequences: 429
Number of extensions: 3511
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 361
length of database: 140,377
effective HSP length: 59
effective length of query: 302
effective length of database: 115,066
effective search space: 34749932
effective search space used: 34749932
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 44 (21.8 bits)