GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004565-TA|BGIBMGA004565-PA|undefined
         (271 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.2  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   6.7  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   8.9  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 128 RHALYKFTSVVEVVRLYYSGSPKDGNTGTSTPKPEKTSSRALTTIDGELVSS 179
           R +L K     +  R     SP D    + T KP+K +S + ++    + SS
Sbjct: 556 RASLSKTPQPPQCPRFRKLDSPSDSGIESGTEKPDKPASSSASSAPTSVCSS 607


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 136 SVVEVVRLYYSGSPKDGN 153
           +V E VR+ Y GS   GN
Sbjct: 198 TVAETVRIIYGGSVTAGN 215


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 12/45 (26%), Positives = 18/45 (40%)

Query: 205 NGLDFYGATFFPTELATPTQAAKLIKPSKVTGGTVSARVRDLLPV 249
           NG D Y  T    EL  PT     +  + +  G    R+ +L  +
Sbjct: 232 NGFDPYVKTPNDEELEKPTDKRMFVLAASIKAGYTIDRLYELTKI 276


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,652
Number of Sequences: 429
Number of extensions: 2804
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 271
length of database: 140,377
effective HSP length: 57
effective length of query: 214
effective length of database: 115,924
effective search space: 24807736
effective search space used: 24807736
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)