GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004564-TA|BGIBMGA004564-PA|IPR003663|Sugar transporter,
IPR005828|General substrate transporter, IPR007114|Major facilitator
superfamily, IPR005829|Sugar transporter superfamily
         (402 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.50 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   4.6  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   6.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.2 bits (55), Expect = 0.50
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 323 SGISTGVAFASLFVVVKTEPGMMKNLGEAFTFMIYATLTLFGVVI 367
           +G  T  AFA  F    + PG+++    AF+     T +L G  +
Sbjct: 899 NGEPTSAAFAQGFATAASSPGLLERASPAFSGTSSPTNSLVGKTV 943


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 7/51 (13%)

Query: 288 LFCLMFYICAITIGVDPIPWIMCGEIFPENVRGMGSGISTGVAFASLFVVV 338
           +F  +F +C + I       +  G +    + G+   I TG+AF S+ ++V
Sbjct: 14  IFNFVFAVCGLGI-------LTLGVLIHLQILGVSKQIETGLAFPSITLIV 57


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.6 bits (46), Expect = 6.1
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 41  LTFILSGRLFTGLCSGLMAPLGPVYVG 67
           LTF++  +    +CS L   + P  +G
Sbjct: 90  LTFVVPHQFIKRICSALFGKIKPTAIG 116


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.329    0.143    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,708
Number of Sequences: 429
Number of extensions: 4844
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 3
length of query: 402
length of database: 140,377
effective HSP length: 59
effective length of query: 343
effective length of database: 115,066
effective search space: 39467638
effective search space used: 39467638
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 45 (22.2 bits)