GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004563-TA|BGIBMGA004563-PA|IPR003663|Sugar transporter,
IPR005828|General substrate transporter, IPR007114|Major facilitator
superfamily, IPR005829|Sugar transporter superfamily
         (535 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   1.2  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    24   3.6  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    24   3.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   4.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   6.3  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   8.4  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 165 PFLLGWALIIKANNLTLMLCGRFFTGMCTGL 195
           P +LG    I   ++ L + GR F  +C G+
Sbjct: 177 PLILGSCKCIYVQSINLCMAGRLFGYLCPGM 207


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 3.6
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 8   DKSKVETKGPIENEPQILIVKDENQRTRGYVQKNFNYKKN 47
           ++S+  T+     EP+I+     N +   Y   N NY  N
Sbjct: 65  ERSQDRTERETSKEPKIISSLSNNYKYSNYNNYNNNYNNN 104


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 3.6
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 8   DKSKVETKGPIENEPQILIVKDENQRTRGYVQKNFNYKKN 47
           ++S+  T+     EP+I+     N +   Y   N NY  N
Sbjct: 65  ERSQDRTERETSKEPKIISSLSNNYKYSNYNNYNNNYNNN 104


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 4.8
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 420 NMAWIPLSCFMLYICAISIGLVPLPWMMCGEIFPTK 455
           N+ +I +  + L+   +S+  + LPW  CG  + T+
Sbjct: 112 NIYYIIILAWALFYLLVSLR-IDLPWRTCGNPWNTR 146


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 4.8
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 420 NMAWIPLSCFMLYICAISIGLVPLPWMMCGEIFPTK 455
           N+ +I +  + L+   +S+  + LPW  CG  + T+
Sbjct: 165 NIYYIIILAWALFYLLVSLR-IDLPWRTCGNPWNTR 199


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 6.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 389 QYGRRPVCFVSGGLTTISMAGLSIFLYL 416
           +YG   + +VSG +TT      +IFLY+
Sbjct: 226 RYGFSFLLYVSGFITTEVAGTYAIFLYI 253


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 494 FYGAIAFIGSIILFFVLPETKGRSLQEIEDKFKNQK 529
           F+ A  FI       V  +T+ R+L+   D+F N K
Sbjct: 182 FHDASNFIAMETFPSVYSKTRRRALEHTLDRFHNDK 217


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.140    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,587
Number of Sequences: 429
Number of extensions: 5341
Number of successful extensions: 28
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 8
length of query: 535
length of database: 140,377
effective HSP length: 61
effective length of query: 474
effective length of database: 114,208
effective search space: 54134592
effective search space used: 54134592
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 46 (22.6 bits)