GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004562-TA|BGIBMGA004562-PA|IPR003663|Sugar transporter,
IPR005828|General substrate transporter, IPR007114|Major facilitator
superfamily, IPR005829|Sugar transporter superfamily
         (580 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   2.3  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 55  KDEVSPNVIENEPDIADINQENQTAGENVETKENYKKNLRISSSNGLELMEDKEAPK 111
           ++E     ++ EP    I Q N+    N+ T+E+  +N  +S    +E++     P+
Sbjct: 323 EEEADTRPLKKEP----ITQSNKRTAGNLATREHPSRNFTMSEDGMIEVIPLSAIPE 375


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.139    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,024
Number of Sequences: 429
Number of extensions: 6639
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 1
length of query: 580
length of database: 140,377
effective HSP length: 61
effective length of query: 519
effective length of database: 114,208
effective search space: 59273952
effective search space used: 59273952
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 46 (22.6 bits)