GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004561-TA|BGIBMGA004561-PA|IPR000005|Helix-turn-helix,
AraC type, IPR000577|Carbohydrate kinase, FGGY, IPR007114|Major
facilitator superfamily, IPR005829|Sugar transporter superfamily,
IPR003663|Sugar transporter, IPR011701|Major facilitator superfamily
MFS_1
         (463 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   4.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   5.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   7.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   9.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   9.5  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)

Query: 261 FYKPIFVMVHVY 272
           FY P+FVM+ VY
Sbjct: 211 FYIPLFVMIQVY 222


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 167 WTAFVCSVITFIDLLIV 183
           W+AF+C  + +I +LI+
Sbjct: 399 WSAFLCISLVYIIMLII 415


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 77  KYGRKVANIISVLPVIVGWLL 97
           +YGR V   I+V  + V WLL
Sbjct: 132 RYGRWVTRRIAVAGIAVVWLL 152


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 171 VCSVITFIDLLIVINSPESPSWLADQGKYED 201
           VC   T+  L + + +P   + L+++ KYED
Sbjct: 576 VCDNQTYTSLQMAMKNPIEFTDLSNERKYED 606


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/12 (66%), Positives = 9/12 (75%)

Query: 261 FYKPIFVMVHVY 272
           FY P+FVMV  Y
Sbjct: 215 FYLPLFVMVFTY 226


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.139    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,112
Number of Sequences: 429
Number of extensions: 4913
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 5
length of query: 463
length of database: 140,377
effective HSP length: 60
effective length of query: 403
effective length of database: 114,637
effective search space: 46198711
effective search space used: 46198711
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 45 (22.2 bits)