GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004560-TA|BGIBMGA004560-PA|IPR003663|Sugar transporter,
IPR005828|General substrate transporter, IPR007114|Major facilitator
superfamily, IPR005829|Sugar transporter superfamily
         (478 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    28   0.20 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   1.4  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   7.4  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 27.9 bits (59), Expect = 0.20
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 34  WIAAIPGFSL---VVGNFIVPSVMARYGRKTANLISIVPLIIGWIGIV 78
           W+A +P  S+   V GN     V +R+GR+  + I ++ L +  IG+V
Sbjct: 336 WVANVPNGSVTNWVSGNHDNHRVASRFGRQRGDEIVMLTLTLPGIGVV 383


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 13/34 (38%), Positives = 15/34 (44%)

Query: 69  PLIIGWIGIVLANSITALFIARFLQGLCMGMATS 102
           PLI+G    +   SI      R    LC GMA S
Sbjct: 177 PLILGSCKCIYVQSINLCMAGRLFGYLCPGMALS 210


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query: 92  LQGLCMGMATSLGSTLIGEYASPRNRGVFLMTI 124
           L+G C+ M      TLI  Y     +  F+  I
Sbjct: 322 LKGYCIDMEVPYSGTLISHYEDGETKSRFISGI 354


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.140    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,457
Number of Sequences: 429
Number of extensions: 4254
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 3
length of query: 478
length of database: 140,377
effective HSP length: 60
effective length of query: 418
effective length of database: 114,637
effective search space: 47918266
effective search space used: 47918266
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 45 (22.2 bits)