GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004559-TA|BGIBMGA004559-PA|IPR011701|Major facilitator
superfamily MFS_1, IPR007114|Major facilitator superfamily
         (455 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   4.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   7.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   7.0  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 215 LNIKRTIIDFHRTMKEENFYKPILIAVHVYTL--GTFSGVNIL 255
           LN++ ++  +   +KE    +PIL+  ++Y L  G  SG  IL
Sbjct: 98  LNLRDSVTKYLIHLKEIEDTEPILLIAYIYHLYMGLLSGGIIL 140


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 278 ITLAVQRLITNAVAVVLMKKVKRRTTLILTTI 309
           +TL +  L++  V ++L+ K+   T+L+L  I
Sbjct: 265 VTLGISILLSLVVFLLLVSKILPPTSLVLPLI 296


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 394 FDNIGLYGTFFLYGCILVYCLIVLWAFLPETKDKTLQEIEEGFKNK 439
           F ++ +Y    L   + +Y L V     P+TKD  +  + E F +K
Sbjct: 109 FLSVAVYCRDRLNPNLFIYALSVAILHRPDTKDLPVPPLTEVFPDK 154


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.139    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,935
Number of Sequences: 429
Number of extensions: 3939
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 3
length of query: 455
length of database: 140,377
effective HSP length: 60
effective length of query: 395
effective length of database: 114,637
effective search space: 45281615
effective search space used: 45281615
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 45 (22.2 bits)