GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004556-TA|BGIBMGA004556-PA|undefined
         (299 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   1.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.6  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 11  YGGALYDGEQRLQYPHGLTHSPASQDKQEHYHYGQDQGSGV 51
           YG A    +Q + YP    ++        +Y + QD GSG+
Sbjct: 66  YGAA--GSQQDMPYPRFPPYNRMDMRNATYYQHQQDHGSGM 104


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 49  SGVSESPRLDQMHQHQSMYP 68
           +G    P   Q+H HQS +P
Sbjct: 803 NGDQSQPPHQQLHHHQSTHP 822


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 4    AAVSSAAYGGALYDGEQRLQYPHGLTHSPASQD 36
            AA++SAA   A +D ++   Y   + +SP  +D
Sbjct: 1046 AAMASAAPMPACFDSDRERLYDCYVCYSPNDED 1078


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.126    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,742
Number of Sequences: 429
Number of extensions: 1448
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 299
length of database: 140,377
effective HSP length: 57
effective length of query: 242
effective length of database: 115,924
effective search space: 28053608
effective search space used: 28053608
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 44 (21.8 bits)