GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004555-TA|BGIBMGA004555-PA|undefined
         (330 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    26   0.52 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   4.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.4  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 87  PVSQSQGYSEGGSVFPGSPGGYSPASRA---AFTARSPLYAHSPAHQP 131
           PV  +   + GG++FPG       A+R+      A SP+ + S A QP
Sbjct: 58  PVGSAVAGTAGGALFPGMAAAGKGAARSDDWLANANSPVGSPSAALQP 105


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 100 VFPGSPGGYSPASRAAFTARSPLYAHSP 127
           +FP +PG ++ +  A  T  +PL    P
Sbjct: 300 IFPPTPGSFNFSMAALATEHTPLSVKFP 327


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 15/54 (27%), Positives = 21/54 (38%)

Query: 84  YASPVSQSQGYSEGGSVFPGSPGGYSPASRAAFTARSPLYAHSPAHQPYLPHQG 137
           Y  P S   G  + G     + G  S    +    +SP   HS A    +P+QG
Sbjct: 598 YNLPYSSLYGRFKRGKYEEPTVGEISQDGSSPHFHQSPSQNHSSAVPDQMPYQG 651


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.131    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,384
Number of Sequences: 429
Number of extensions: 1963
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 330
length of database: 140,377
effective HSP length: 58
effective length of query: 272
effective length of database: 115,495
effective search space: 31414640
effective search space used: 31414640
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 44 (21.8 bits)