GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004550-TA|BGIBMGA004550-PA|IPR001452|Src homology-3
         (653 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             30   0.069
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    25   1.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   2.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 29.9 bits (64), Expect = 0.069
 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 5    GAGVA--GSGTSRSRGEAQRTLDEFDELAGIRGGEGGERSVYVLEHLATFTVTRETGI 60
            GAG+A   +GTS SRG AQ +    D   GI  G G   S   L++L   ++  ETGI
Sbjct: 1243 GAGIAETSAGTSNSRGAAQMSKVPRDVSEGIYDGSGANGS--FLDNLIRSSL--ETGI 1296


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 577 TIVAPAFSPPSSPHLYPNP 595
           T+V   F     PH+YPNP
Sbjct: 439 TVVIGTFKLHRQPHIYPNP 457


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 470  YNEQYAPFARNNLRPPIGREDSGSAASSP----DREPPYRPADRDE 511
            Y +  AP+     R  +GR   GSA + P       PP  P + D+
Sbjct: 1824 YGQYGAPYDHYGSRGSVGRRSVGSARNIPVSGSPEPPPPPPRNHDQ 1869


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,349
Number of Sequences: 429
Number of extensions: 6823
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 3
length of query: 653
length of database: 140,377
effective HSP length: 62
effective length of query: 591
effective length of database: 113,779
effective search space: 67243389
effective search space used: 67243389
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)