GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004549-TA|BGIBMGA004549-PA|IPR007087|Zinc finger,
C2H2-type
         (1188 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    31   0.042
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    25   3.7  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    25   4.8  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    25   4.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    25   4.8  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    25   4.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   6.4  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    24   8.5  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 31.5 bits (68), Expect = 0.042
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 6/72 (8%)

Query: 790 HKSTGPTIPPSCHDQTCPLNKSAGGMNLH-----YHCPHCSQAYVDLKLLFSHMMKKHSN 844
           H    P   P CH +    +     M LH     YHC HC + +V +  L  H ++ H+ 
Sbjct: 4   HTGEKPFECPECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRH-LRVHTG 62

Query: 845 NESAPAGLAATK 856
                  L A K
Sbjct: 63  ERPYACELCAAK 74


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein protein.
          Length = 69

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 8/32 (25%), Positives = 16/32 (50%)

Query: 1096 FHCLKCDFVCTDTNKVVAHRRQHQKLDSIQAA 1127
            F C KC + C + + + +H + H  +   + A
Sbjct: 17   FKCEKCSYSCVNKSMLNSHLKSHSNVYQYRCA 48


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 100 CDKVYISTSDVQMHANYH 117
           C+KVY+S   ++MH   H
Sbjct: 22  CEKVYVSLGALKMHIRTH 39


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 565 VEEFPRIKFHHFEVFTNLDGCSQYY 589
           ++EFP+ K    E +TNL    +YY
Sbjct: 274 LDEFPQPKHMLIEAYTNLSMTMKYY 298


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 565 VEEFPRIKFHHFEVFTNLDGCSQYY 589
           ++EFP+ K    E +TNL    +YY
Sbjct: 274 LDEFPQPKHMLIEAYTNLSMTMKYY 298


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc finger
            domain-Z2 isoform protein.
          Length = 71

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 8/36 (22%), Positives = 18/36 (50%)

Query: 1146 HSKKQTHYHCLQCGFAVLGLSQMTSHKYKHQEANLG 1181
            H+++Q  Y C+ C       + + +H Y + ++  G
Sbjct: 29   HAERQEEYRCVICERVYCSRNSLMTHIYTYHKSRPG 64


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 10/98 (10%)

Query: 692 QDKSFEEARDYSLKERASVDSVGSTKEADIYAATNFTIKSE-----FEREQ---DNVSVV 743
           QDK +EE + Y L E AS  S    K  D   + N  ++ +     FE+ +   ++ +  
Sbjct: 402 QDKYYEEYKMYELGELAS--SFVGPKVKDCLISWNPLMQPKQPIKLFEQWKSILESGTTT 459

Query: 744 KATGTFYPSSHLRSNASSPSPRSIYDASPSKDLKPRVD 781
             T T +P  HL  N+  PS R        +  +P ++
Sbjct: 460 LQTRTMHPYDHLVWNSWMPSIRGAIQQWTCRQPEPLIE 497


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 814 GMNLHYHCPHCSQAYVDLKLLFSHMMKKHSNNES 847
           G+N    CP+C + +     L  H   KH  +++
Sbjct: 1   GINEPQECPYCRRNFSCYYSLKRHFQDKHEQSDT 34


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.133    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 358,948
Number of Sequences: 429
Number of extensions: 16644
Number of successful extensions: 51
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 41
Number of HSP's gapped (non-prelim): 11
length of query: 1188
length of database: 140,377
effective HSP length: 65
effective length of query: 1123
effective length of database: 112,492
effective search space: 126328516
effective search space used: 126328516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 49 (23.8 bits)