GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004548-TA|BGIBMGA004548-PA|undefined
         (467 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    28   0.15 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    27   0.25 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               26   0.59 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   1.8  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   7.2  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   7.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   9.5  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 28.3 bits (60), Expect = 0.15
 Identities = 23/116 (19%), Positives = 48/116 (41%), Gaps = 4/116 (3%)

Query: 67  APNTSAFSDDSNEGNCEDTRSSINGNERTTPEHIEDDKEDGGYAKIGVKNFNLLKGGAVD 126
           A N +A + ++N  N ++  ++     R       D+K++G       +N N       +
Sbjct: 432 ADNQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQN 491

Query: 127 LSRRLSTDSNENIESNYQDRLTENKKVDSFQRTYIHSLQMTQASENDRTVLNFSNL 182
            +R+     N+N ++   +R  +NK+  + Q    +       + ND  V + S L
Sbjct: 492 GNRQNGNKQNDNKQNG--NRQNDNKRNGNRQND--NQNNQNDNNRNDNQVHHSSKL 543


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 27.5 bits (58), Expect = 0.25
 Identities = 11/38 (28%), Positives = 23/38 (60%)

Query: 303 DSTLEDGTERSIRRSSSATEDEDSTNITPPKTPDNELQ 340
           DS +E GTE+  + +SS+     ++  + P++ D E++
Sbjct: 579 DSGIESGTEKPDKPASSSASSAPTSVCSSPRSEDKEVE 616


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 26.2 bits (55), Expect = 0.59
 Identities = 11/51 (21%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 214 EDKGQDINANERLENQESIETDAQSNGDTNNATNRILRDYAMNTMKELLGI 264
           +DK  D + NE +++Q+     + S+ +  N+ ++    +++NT  ++ G+
Sbjct: 86  DDKDDDESDNENIKSQKEFPNSSSSDDERPNSIHQ-RASFSLNTDGDIAGL 135


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 309 GTERSIRRSSSATEDEDSTNITPPKTPDNELQAQRQRALQIINQQSMRLFNRSQAQ 364
           G E     +S + EDED T + P     N+   +   A  ++ + + R    +QAQ
Sbjct: 423 GMEEPTNTASGSNEDEDETPLDPVVVISNDKSTEFFLA-TVVEEAACRFSAVAQAQ 477


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 262 LGIYGLSSNEVAEAISGQIRALEALQGKPFTQLPLSLKRRHDSTLEDGTERSI 314
           +G YG    ++       + ALE L  +      + L+R+ D+T +D  + +I
Sbjct: 184 MGFYGTRGKKII------LDALEELDKRGVMDFQIGLQRKKDTTFDDYLDYAI 230


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 262 LGIYGLSSNEVAEAISGQIRALEALQGKPFTQLPLSLKRRHDSTLEDGTERSI 314
           +G YG    ++       + ALE L  +      + L+R+ D+T +D  + +I
Sbjct: 184 MGFYGTRGKKII------LDALEELDKRGVMDFQIGLQRKKDTTFDDYLDYAI 230


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 126 DLSRRLSTDSNENIESNYQDRLTENKKVD 154
           D+   LST  N++I    ++    +KK+D
Sbjct: 303 DIKTELSTGMNDDIPPETEEEEENDKKLD 331


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.307    0.123    0.334 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,370
Number of Sequences: 429
Number of extensions: 5079
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 8
length of query: 467
length of database: 140,377
effective HSP length: 60
effective length of query: 407
effective length of database: 114,637
effective search space: 46657259
effective search space used: 46657259
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 45 (22.2 bits)