GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004544-TA|BGIBMGA004544-PA|undefined
         (224 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.3  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   3.1  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
          protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 38 SIFHKKTGLEYLSAARSLHPELHAGSTLAS 67
          ++  +KT L YL    +L  EL A + LA+
Sbjct: 43 AMVEEKTQLRYLEELNALRTELGASTKLAT 72


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 16  RVRLPLFANYEYVIAPVQTQRFSIFHKKTGLEYL 49
           R+R    A++ +++ P+      +FH++  L YL
Sbjct: 378 RLRNGCPADWLWIVPPISGSATPVFHQEMALYYL 411


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 29  IAPVQTQRFSIFHKKTGLEYLSAARSLHPEL 59
           I P+  + FS   +K  L + + A +++PEL
Sbjct: 129 ICPIYIESFSYHKQKLRLRWGTGAVTVNPEL 159


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.132    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,169
Number of Sequences: 429
Number of extensions: 1074
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 224
length of database: 140,377
effective HSP length: 55
effective length of query: 169
effective length of database: 116,782
effective search space: 19736158
effective search space used: 19736158
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)