GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004543-TA|BGIBMGA004543-PA|undefined
         (117 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   2.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   2.1  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   2.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   2.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   6.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   8.5  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
          protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 10 LRAARPKGRERLA-VADIVETPAPASATALTESETPAHKTVWAPCPRLSSAVPLYL 64
          L  A P G  +LA +      P  +    +    T    TV+   PR+   VPL L
Sbjct: 33 LEFAFPNGYAKLAAIKSGSYIPGASLPIDVDVYNTEQQSTVFVAIPRIQDGVPLTL 88


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 59  AVPLYLQLTGFLRYGQLHSTLHIKHQVIGEML 90
           AVP Y+Q    +R     S     H+V+G  L
Sbjct: 453 AVPKYIQRLKAIRATLKASPFFASHEVVGSSL 484


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 59  AVPLYLQLTGFLRYGQLHSTLHIKHQVIGEML 90
           AVP Y+Q    +R     S     H+V+G  L
Sbjct: 368 AVPKYIQRLKAIRATLKASPFFASHEVVGSSL 399


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 59  AVPLYLQLTGFLRYGQLHSTLHIKHQVIGEML 90
           AVP Y+Q    +R     S     H+V+G  L
Sbjct: 687 AVPKYIQRLKAIRATLKASPFFASHEVVGSSL 718


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 4   PDLTFKLRAARPKGRERLAVADIV 27
           P++T++L   R    ERL V   V
Sbjct: 423 PEITWELDGKRLSNTERLQVGQYV 446


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
          isoform protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 8.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 26 IVETPAPASATALTESETPAH 46
          I    A A++  L ++ETP H
Sbjct: 20 IASVVAGAASLTLVKAETPEH 40


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.135    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,569
Number of Sequences: 429
Number of extensions: 1422
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 117
length of database: 140,377
effective HSP length: 51
effective length of query: 66
effective length of database: 118,498
effective search space:  7820868
effective search space used:  7820868
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.1 bits)
S2: 39 (19.8 bits)